NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;sentieon_haplotyper) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_VCF_FOR_ENTROPY (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;sentieon_haplotyper)

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Task Info

Status: succeeded
Hash: 872ebf47017b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;sentieon_haplotyper
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 47/e5cbec
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/e5cbec8a638ee8207dc5b5d81123d1
Native ID: nf-47e5cbec8a638ee8207dc5b5d81123d1-f20dc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 7.3 MB / 1.0 GB
Process I/O (rchar / wchar): 30.1 MB / 1.0 MB
Disk I/O (read / write): - / 1.0 MB
Host: i-0e80aac854e659336 ( spot)

Runtime

Submitted: Jan 27, 2026 4:41:44 PM
Completed: Jan 27, 2026 4:41:49 PM
Total Duration: 4s

Phases

Queue: 3s
Execution: 1s
Stage/Unstage: 0s

Attempt 4

Execution

Status: succeeded - cached
Hash: a1/ff5067
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/ff5067a89cd5b02d6071022f8ad2bd
Native ID: nf-a1ff5067a89cd5b02d6071022f8ad2bd-71fcb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 7.2 MB / 1.0 GB
Process I/O (rchar / wchar): 34.1 MB / 1.2 MB
Disk I/O (read / write): - / 1.2 MB
Host: i-081f6d7d764554ac4 ( spot)

Runtime

Submitted: Jan 27, 2026 5:00:04 PM
Completed: Jan 27, 2026 5:00:10 PM
Total Duration: 5s

Phases

Queue: 4s
Execution: 1s
Stage/Unstage: 0s

Attempt 3

Execution

Status: succeeded
Hash: 61/9cb6b6
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/9cb6b6d6d8bb7a12a3cff3b5360f85
Native ID: nf-619cb6b6d6d8bb7a12a3cff3b5360f85-56873

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 1
Memory (peak / alloc): 7.1 MB / 1.0 GB
Process I/O (rchar / wchar): 33.1 MB / 1.4 MB
Disk I/O (read / write): - / 1.4 MB
Host: i-0e2783751d1868218 ( spot)

Runtime

Submitted: Jan 27, 2026 4:31:07 PM
Completed: Jan 27, 2026 4:31:14 PM
Total Duration: 6s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: succeeded
Hash: 54/28f796
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/28f796a5911af1cdb094eb570be144
Native ID: nf-5428f796a5911af1cdb094eb570be144-491f0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 1
Memory (peak / alloc): 7.1 MB / 1.0 GB
Process I/O (rchar / wchar): 34.9 MB / 1.4 MB
Disk I/O (read / write): - / 1.4 MB
Host: i-033f15e2fde892b77 ( spot)

Runtime

Submitted: Jan 27, 2026 12:37:17 PM
Completed: Jan 27, 2026 12:37:23 PM
Total Duration: 5s

Phases

Queue: 3s
Execution: 1s
Stage/Unstage: 1s

Attempt 1

Execution

Status: succeeded
Hash: bb/ad4bc3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/ad4bc3da68abc7c01dda5b8bb68c27
Native ID: nf-bbad4bc3da68abc7c01dda5b8bb68c27-43edc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.4 / 1
Memory (peak / alloc): 3.4 MB / 2.0 GB
Process I/O (rchar / wchar): 130.7 KB / 7.5 KB
Disk I/O (read / write): - / 12.0 KB
Host: i-0a040fd4fbf3872f0 ( spot)

Runtime

Submitted: Jan 26, 2026 9:45:47 PM
Completed: Jan 26, 2026 9:45:53 PM
Total Duration: 5s

Phases

Queue: 3s
Execution: -
Stage/Unstage: -