NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
CNVKIT_CALL (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: c0082cd61778
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 2

Attempt 2

Execution

Status: succeeded - cached
Hash: 9a/ab7861
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/cnvkit:0.9.10--pyhdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ab7861a16c4eca57bcfd8d63b49554
Native ID: nf-9aab7861a16c4eca57bcfd8d63b49554-8812a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 7.5 / 1
Memory (peak / alloc): 174.2 MB / 6.0 GB
Process I/O (rchar / wchar): 75.4 MB / 121.0 KB
Disk I/O (read / write): - / 136.0 KB
Host: i-0871dc4d898f98e3a ( spot)

Runtime

Submitted: Jan 27, 2026 4:33:49 PM
Completed: Jan 27, 2026 4:34:11 PM
Total Duration: 21s

Phases

Queue: 16s
Execution: 4s
Stage/Unstage: 1s

Attempt 1

Execution

Status: succeeded
Hash: cf/d6ff70
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/cnvkit:0.9.10--pyhdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d6ff70bcd8d961f5292aae2e2d303d
Native ID: nf-cfd6ff70bcd8d961f5292aae2e2d303d-ebb2b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 7.4 / 1
Memory (peak / alloc): 172.5 MB / 6.0 GB
Process I/O (rchar / wchar): 75.4 MB / 121.0 KB
Disk I/O (read / write): - / 136.0 KB
Host: i-0ec6b708d35528bbd ( spot)

Runtime

Submitted: Jan 27, 2026 12:41:06 PM
Completed: Jan 27, 2026 12:41:26 PM
Total Duration: 19s

Phases

Queue: 14s
Execution: 3s
Stage/Unstage: 2s