NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_51078349-54425074) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_51078349-54425074)

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Task Info

Status: succeeded
Hash: cf8def0fbe2b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_51078349-54425074
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 85/69041b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/69041ba10c40af9efcf088be7bb040
Native ID: nf-8569041ba10c40af9efcf088be7bb040-207f5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 2.5 GB / 8.0 GB
Process I/O (rchar / wchar): 1.4 GB / 7.2 MB
Disk I/O (read / write): 1.3 GB / 7.2 MB
Host: i-05222270dcbe6d3d7 ( on-demand)

Runtime

Submitted: Jan 28, 2026 10:22:28 AM
Completed: Jan 28, 2026 11:00:16 AM
Total Duration: 37m 47s

Phases

Queue: 1m 19s
Execution: 31m 44s
Stage/Unstage: 4m 44s

Attempt 3

Execution

Status: succeeded - cached
Hash: 15/03dfb3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/03dfb39fd8af79ad3cacc9ce175b37
Native ID: nf-1503dfb39fd8af79ad3cacc9ce175b37-bcffd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 2.6 GB / 8.0 GB
Process I/O (rchar / wchar): 1.4 GB / 7.2 MB
Disk I/O (read / write): 1.3 GB / 7.2 MB
Host: i-05f72021f51dbd849 ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:24:42 PM
Completed: Jan 27, 2026 5:01:25 PM
Total Duration: 36m 42s

Phases

Queue: 2m 1s
Execution: 31m 9s
Stage/Unstage: 3m 32s

Attempt 2

Execution

Status: succeeded
Hash: 24/c840b7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/c840b71e27a58020bc6bda08acf682
Native ID: nf-24c840b71e27a58020bc6bda08acf682-90e6d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 1.6 GB / 8.0 GB
Process I/O (rchar / wchar): 2.0 GB / 6.2 MB
Disk I/O (read / write): 1.9 GB / 6.2 MB
Host: i-03d81428cca0b56b1 ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:53:49 PM
Completed: Jan 27, 2026 3:21:32 PM
Total Duration: 27m 42s

Phases

Queue: 1m 49s
Execution: 21m 8s
Stage/Unstage: 4m 45s

Attempt 1

Execution

Status: succeeded
Hash: e1/e35829
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/e3582991955d7ac36874221fe321c8
Native ID: nf-e1e3582991955d7ac36874221fe321c8-97f77

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 3.2 GB / 8.0 GB
Process I/O (rchar / wchar): 33.3 GB / 54.2 MB
Disk I/O (read / write): 32.1 GB / 54.1 MB
Host: i-07cd03522e376f4cf ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:20:20 AM
Completed: Jan 27, 2026 7:39:53 AM
Total Duration: 5h 19m

Phases

Queue: 1m 1s
Execution: 5h 15m
Stage/Unstage: 3m 24s