NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_38573339-38906036) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_38573339-38906036)

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Task Info

Status: succeeded
Hash: ef8534311235
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_38573339-38906036
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 9a/798524
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/798524f24e5a78be6793901121255e
Native ID: nf-9a798524f24e5a78be6793901121255e-cd2b5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 2.4 GB / 8.0 GB
Process I/O (rchar / wchar): 450.8 MB / 2.3 MB
Disk I/O (read / write): 379.0 MB / 2.3 MB
Host: i-05222270dcbe6d3d7 ( on-demand)

Runtime

Submitted: Jan 28, 2026 10:22:26 AM
Completed: Jan 28, 2026 10:35:50 AM
Total Duration: 13m 23s

Phases

Queue: 1m 21s
Execution: 7m 33s
Stage/Unstage: 4m 29s

Attempt 3

Execution

Status: succeeded - cached
Hash: e7/e4642a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e4642a5b745fcb03d8c5b2a9e65d98
Native ID: nf-e7e4642a5b745fcb03d8c5b2a9e65d98-fd223

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 2.3 GB / 8.0 GB
Process I/O (rchar / wchar): 450.8 MB / 2.3 MB
Disk I/O (read / write): 362.8 MB / 2.3 MB
Host: i-05f72021f51dbd849 ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:24:43 PM
Completed: Jan 27, 2026 4:38:08 PM
Total Duration: 13m 24s

Phases

Queue: 2m 0s
Execution: 7m 20s
Stage/Unstage: 4m 4s

Attempt 2

Execution

Status: succeeded
Hash: b6/cb4de3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/cb4de38bbd39219f550cf21beb6378
Native ID: nf-b6cb4de38bbd39219f550cf21beb6378-48d24

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 1.5 GB / 8.0 GB
Process I/O (rchar / wchar): 582.7 MB / 2.2 MB
Disk I/O (read / write): 519.2 MB / 2.2 MB
Host: i-03d81428cca0b56b1 ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:53:48 PM
Completed: Jan 27, 2026 3:05:19 PM
Total Duration: 11m 30s

Phases

Queue: 1m 50s
Execution: 4m 55s
Stage/Unstage: 4m 45s

Attempt 1

Execution

Status: succeeded
Hash: 35/2fc5f4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/2fc5f4aa6390d85d81c1a12d8acc23
Native ID: nf-352fc5f4aa6390d85d81c1a12d8acc23-cfbfe

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 2.8 GB / 8.0 GB
Process I/O (rchar / wchar): 30.6 GB / 48.3 MB
Disk I/O (read / write): 29.3 GB / 48.2 MB
Host: i-07cd03522e376f4cf ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:20:20 AM
Completed: Jan 27, 2026 6:50:02 AM
Total Duration: 4h 29m

Phases

Queue: 1m 1s
Execution: 4h 24m
Stage/Unstage: 3m 52s