|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BG5-N1-BDNA-1_2375WFLT3_s29;sentieon_haplotyper)
|
6s |
4s |
- |
- |
9.2 MB |
77% |
1.6 MB |
153.8 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BG5-N1-BDNA-1_2375WFLT3_s29;strelka)
|
4s |
3s |
- |
- |
9.1 MB |
104% |
992.7 KB |
146.3 KB |
0 bytes |
148.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BICA-N1-BDNA-1_2375WFLT3_s32;haplotypecaller)
|
4s |
3s |
- |
- |
9.8 MB |
119% |
1.6 MB |
151.3 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BICA-N1-BDNA-1_2375WFLT3_s32;manta)
|
5s |
3s |
- |
- |
3.3 MB |
115% |
128.8 KB |
8.2 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BICA-N1-BDNA-1_2375WFLT3_s32;sentieon_haplotyper)
|
4s |
3s |
- |
- |
9.5 MB |
123% |
1.6 MB |
151.7 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BICA-N1-BDNA-1_2375WFLT3_s32;strelka)
|
5s |
4s |
- |
- |
10.0 MB |
104% |
981.5 KB |
144.7 KB |
0 bytes |
148.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
34s |
4s |
22s |
7s |
2.1 GB |
1175% |
2.0 GB |
29.3 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
34s |
3s |
22s |
8s |
2.1 GB |
1142% |
2.0 GB |
29.2 MB |
0 bytes |
22.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
29s |
2s |
18s |
8s |
2.3 GB |
1483% |
2.0 GB |
29.5 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
31s |
3s |
19s |
8s |
1.8 GB |
1323% |
2.0 GB |
29.3 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
2m 40s |
2s |
2m 17s |
21s |
1.3 GB |
118% |
2.0 GB |
2.6 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
2m 43s |
3s |
2m 18s |
22s |
1.5 GB |
117% |
2.0 GB |
2.6 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
2m 38s |
2s |
2m 9s |
27s |
1.3 GB |
118% |
2.0 GB |
2.7 MB |
0 bytes |
2.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
2m 38s |
3s |
2m 14s |
21s |
1.2 GB |
121% |
2.0 GB |
2.6 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
5m 51s |
1m 29s |
- |
- |
15.6 MB |
112% |
5.7 MB |
110.8 KB |
5.4 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
4m 38s |
1m 29s |
- |
- |
15.0 MB |
115% |
5.7 MB |
110.7 KB |
5.4 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
6m 1s |
1m 26s |
- |
- |
16.0 MB |
104% |
5.7 MB |
110.9 KB |
5.5 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
4m 34s |
1m 17s |
- |
- |
14.0 MB |
99% |
5.7 MB |
110.9 KB |
5.4 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
15m 32s |
17s |
13m 12s |
2m 3s |
7.4 GB |
486% |
412.3 GB |
151.5 MB |
34.5 GB |
125.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
59m 18s |
17s |
50m 17s |
8m 44s |
8.3 GB |
520% |
1.7 TB |
153.9 MB |
568.9 GB |
127.8 MB |
1 |