Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/1a5d251a226dfcbbaba9247e2a6db0/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/e07bafc934da696ea81357c0ac2cf5/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/ebca055e27fdacbc84632ce97852bb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/ebca055e27fdacbc84632ce97852bb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/4be880eb6bc2edc369423e8ed7f0cb/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11220609
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11220609
Known Splicing Events:	11135531
Partial Novel Splicing Events:	59611
Novel Splicing Events:	23234
Filtered Splicing Events:	2233

Total splicing  Junctions:	176239
Known Splicing Junctions:	148697
Partial Novel Splicing Junctions:	22064
Novel Splicing Junctions:	5478

===================================================================
Create BED file ...
Create Interact file ...