Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/6f075e27ea1e247434df15c004d2cd/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/e3d7ac39012c768d43cf47f9f74630/rna_s1221_S42.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/0b847d74e5e3e07a748ad558672c66/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/449b2038fd2a1a0be6cd937e118f81/rna_s1221_S42_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/b925ae3eb86009e9f0f628ef22e346/rna_s1221_S42_collectinsertsize.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/71b2048cd38af44eb098604d29efaa/rna_s1221_S42.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b44c4867d9ac0f4ca0e920426259fb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/383fc958638c6d968a5faae88ad470/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/4be880eb6bc2edc369423e8ed7f0cb/rna_s1221_S42.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/98/96845d036e87121418d97a9810c02d/workflow_summary_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/7774b931aa4e760e2d3061827652ee/rna_s1221_S42.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/4be880eb6bc2edc369423e8ed7f0cb/rna_s1221_S42.Log.final.out
  Downloading: s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_updated_outputs_test/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/13bb3e259119b7a7bde08f47b029a0/rna_s1221_S42_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/4e380caf3a60b4bdece29dc6b09829/rna_s1221_S42_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/21ce5030034993a39020f99ebbc3cc/rna_s1221_S42.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/4e380caf3a60b4bdece29dc6b09829/rna_s1221_S42_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/13bb3e259119b7a7bde08f47b029a0/rna_s1221_S42_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/f836d0695175d2561c89cf4d9a914a/rna_s1221_S42_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/bf1055447bbc4066304ba2d6d01be3/rna_s1221_S42.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/ebca055e27fdacbc84632ce97852bb/rna_s1221_S42.junction_annotation.log
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/02b878661aa9a8e8cf598af11ba4d9/rna_s1221_S42.bam_stat.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/33421a7f72406113109bd19cabe6b5/rna_s1221_S42_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b44c4867d9ac0f4ca0e920426259fb/.command.run
==> STAGING COMPLETE (33 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.gLK5WL4lWe
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 70/70  
|    custom_content | preseq_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rseqc_extra_metrics: Found 1 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 1 General Statistics columns
|    custom_content | rna_contamination: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | seqtools_metrics: Found 1 General Statistics columns
|          kallisto | Found 1 reports
|            picard | Found 1 InsertSizeMetrics reports
|            picard | Found 1 MarkDuplicates reports
|            picard | Found 1 RnaSeqMetrics reports
|            preseq | Found 1 reports
|             rseqc | Found 1 read_distribution reports
|             rseqc | Found 1 inner_distance reports
|             rseqc | Found 1 read_duplication reports
|             rseqc | Found 1 junction_annotation reports
|             rseqc | Found 1 junction_saturation reports
|             rseqc | Found 1 infer_experiment reports
|             rseqc | Found 1 bam_stat reports
|              star | Found 1 reports and 1 gene count files
|             fastp | Found 1 reports
|            fastqc | Found 4 reports
|            fastqc | Found 2 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete