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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/811e4196f4cb9997cfeac8f603c88b/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b509e4ca9e6976900958612e484a7c/rna_s1221_S42_preseq_mqc.tsv
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==> STAGING COMPLETE (33 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.cOlvxZ2l2M
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 70/70  
|    custom_content | preseq_metrics: Found 1 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 1 General Statistics columns
|    custom_content | seqtools_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rseqc_extra_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | rna_contamination: Found 1 General Statistics columns
|          kallisto | Found 1 reports
|            picard | Found 1 InsertSizeMetrics reports
|            picard | Found 1 MarkDuplicates reports
|            picard | Found 1 RnaSeqMetrics reports
|            preseq | Found 1 reports
|             rseqc | Found 1 read_distribution reports
|             rseqc | Found 1 inner_distance reports
|             rseqc | Found 1 read_duplication reports
|             rseqc | Found 1 junction_annotation reports
|             rseqc | Found 1 junction_saturation reports
|             rseqc | Found 1 infer_experiment reports
|             rseqc | Found 1 bam_stat reports
|              star | Found 1 reports and 1 gene count files
|             fastp | Found 1 reports
|            fastqc | Found 4 reports
|            fastqc | Found 2 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete