Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/1502d9effb6566727b453c9db1353d/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/2a8afa4b7ec8fbe6f42b6ebad59e86/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/2a8afa4b7ec8fbe6f42b6ebad59e86/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/9f9307a321d2abc13f6184ee039b3f/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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