Prefix: s3://natera-platform-sandbox/platform-infra/stories/PLTFINF-169-semiproductionize/cgp_atx_exp0001/tools_daq_bams__8a99ba01--20260203-171151
| Path | ||
|---|---|---|
| /annotation/mutect2/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 10:20 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34.mutect2.filtered_custom.ann_snpEff.genes.txt | Feb 03, 2026 10:20 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34/snpEff_summary.html | Feb 03, 2026 10:20 PM | |
| /reports/raw_qc/bcftools/mutect2/1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19/1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19.mutect2.whatshap.phased.bcftools_stats.txt | Feb 03, 2026 10:20 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34.mutect2.filtered_custom.ann_snpEff.csv | Feb 03, 2026 10:20 PM | |
| /variant_calling/chip_variants/1029_3N0-N1-BDNA-1_2375WFLT3_s09/1029_3N0-N1-BDNA-1_2375WFLT3_s09.chip_candidates.vcf.gz | Feb 03, 2026 10:19 PM | |
| /variant_calling/chip_variants/1029_3N0-N1-BDNA-1_2375WFLT3_s09/1029_3N0-N1-BDNA-1_2375WFLT3_s09.chip_candidates.vcf.gz.tbi | Feb 03, 2026 10:19 PM | |
| /annotation/mutect2/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz | Feb 03, 2026 10:19 PM | |
| /annotation/mutect2/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 03, 2026 10:19 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09.mutect2.filtered_custom.ann_snpEff.genes.txt | Feb 03, 2026 10:19 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09.mutect2.filtered_custom.ann_snpEff.csv | Feb 03, 2026 10:19 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_3N0-T1-TDNA-1_23FC2GLT4_s09_vs_1029_3N0-N1-BDNA-1_2375WFLT3_s09/snpEff_summary.html | Feb 03, 2026 10:19 PM | |
| /variant_calling/whatshap/1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19.mutect2.whatshap.phased.vcf.gz | Feb 03, 2026 10:19 PM | |
| /variant_calling/chip_variants/1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-N1-BDNA-1_2375WFLT3_s36.chip_candidates.vcf.gz | Feb 03, 2026 10:18 PM | |
| /variant_calling/chip_variants/1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-N1-BDNA-1_2375WFLT3_s36.chip_candidates.vcf.gz.tbi | Feb 03, 2026 10:18 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36.mutect2.filtered_custom.ann_snpEff.genes.txt | Feb 03, 2026 10:18 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36/snpEff_summary.html | Feb 03, 2026 10:18 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36/1029_BK2H-T1-TDNA-1_23FC2GLT4_s37_vs_1029_BK2H-N1-BDNA-1_2375WFLT3_s36.mutect2.filtered_custom.ann_snpEff.csv | Feb 03, 2026 10:18 PM | |
| /annotation/mutect2/1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19/1029_8OI-T1-TDNA-1_23FC2GLT4_s19_vs_1029_8OI-N1-BDNA-1_2375WFLT3_s19.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 03, 2026 10:17 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34/1029_BIHO-T1-TDNA-1_23FC2GLT4_s35_vs_1029_BIHO-N1-BDNA-1_2375WFLT3_s34.mutect2.filtered.FILTER.summary | Feb 03, 2026 10:16 PM |