cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 659_bTo-N1-BDNA-1_B23KFG5LT4_1 --max_event_count 5 -v 659_bTo-N1-BDNA-1_B23KFG5LT4_1.tnseq_tumor_only.vcf.gz --contamination 659_bTo-N1-BDNA-1_B23KFG5LT4_1.tnseq_tumor_only.contamination_data.tsv --tumor_segments 659_bTo-N1-BDNA-1_B23KFG5LT4_1.tnseq_tumor_only.segments --orientation_priors 659_bTo-N1-BDNA-1_B23KFG5LT4_1.tnseq_tumor_only.orientation_data.tsv 659_bTo-N1-BDNA-1_B23KFG5LT4_1.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:194000001, elapsed 0.0s, est remaining 0.9s, peak mem 343MB, user 0.4s, sys 1.4s, output queue size 157
progress 10% @chr2:104000001, elapsed 0.1s, est remaining 0.7s, peak mem 343MB, user 0.9s, sys 3.3s, output queue size 242
progress 15% @chr2:166000001, elapsed 0.1s, est remaining 0.5s, peak mem 343MB, user 1.5s, sys 5.3s, output queue size 186
progress 20% @chr3:184000001, elapsed 0.1s, est remaining 0.5s, peak mem 343MB, user 2.1s, sys 7.2s, output queue size 347
progress 25% @chr4:147000001, elapsed 0.1s, est remaining 0.4s, peak mem 343MB, user 2.6s, sys 9.3s, output queue size 508
progress 30% @chr5:114000001, elapsed 0.2s, est remaining 0.4s, peak mem 343MB, user 3.2s, sys 11.2s, output queue size 669
progress 35% @chr6:87000001, elapsed 0.2s, est remaining 0.4s, peak mem 343MB, user 3.8s, sys 13.2s, output queue size 831
progress 40% @chr7:89000001, elapsed 0.2s, est remaining 0.3s, peak mem 343MB, user 4.4s, sys 15.0s, output queue size 992
progress 45% @chr8:101000001, elapsed 0.2s, est remaining 0.3s, peak mem 343MB, user 5.1s, sys 17.0s, output queue size 1155
progress 50% @chr8:38000001, elapsed 0.3s, est remaining 0.3s, peak mem 343MB, user 5.8s, sys 18.9s, output queue size 1316
progress 55% @chr10:108000001, elapsed 0.3s, est remaining 0.2s, peak mem 343MB, user 6.3s, sys 20.8s, output queue size 1477
progress 60% @chr12:27000001, elapsed 0.3s, est remaining 0.2s, peak mem 343MB, user 7.0s, sys 22.8s, output queue size 1639
progress 65% @chr13:38000001, elapsed 0.4s, est remaining 0.2s, peak mem 344MB, user 7.5s, sys 24.8s, output queue size 1801
progress 70% @chr14:93000001, elapsed 0.4s, est remaining 0.2s, peak mem 344MB, user 7.9s, sys 26.9s, output queue size 1963
progress 75% @chr16:41000001, elapsed 0.4s, est remaining 0.1s, peak mem 344MB, user 8.4s, sys 28.7s, output queue size 2125
progress 80% @chr16:77000001, elapsed 0.4s, est remaining 0.1s, peak mem 344MB, user 9.1s, sys 30.8s, output queue size 2286
progress 85% @chr20:43000001, elapsed 0.5s, est remaining 0.1s, peak mem 344MB, user 9.8s, sys 32.7s, output queue size 728
progress 90% @chrX:74000001, elapsed 0.5s, est remaining 0.1s, peak mem 346MB, user 10.3s, sys 34.4s, output queue size 890
progress 95% @chrUn_KI270751v1:1, elapsed 0.5s, est remaining 0.0s, peak mem 348MB, user 10.6s, sys 36.1s, output queue size 1193
progress 100% @HLA-DQB1*03:03:02:03:1, elapsed 0.6s, est remaining 0.0s, peak mem 349MB, user 11.0s, sys 44.9s, output queue size 4476
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa320b
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 3115883
output file size: 2206745
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 65277 calls 5.450 user 0.153 sys 12.337 real
"predict_filter": 21759 calls 1.528 user 0.579 sys 2.474 real
advance: 3219322 calls 1.803 user 16.894 sys 21.339 real
done: 1 calls 0.012 user 0.000 sys 0.016 real
execute: 1 calls 0.007 user 0.002 sys 0.840 real
fetch_ref: 51840 calls 0.330 user 0.329 sys 1.226 real
idle: 19814 calls 9.049 user 0.588 sys 308.642 real
init: 1 calls 0.635 user 0.159 sys 1.643 real
overall: 368492544 mem 37.791 user 47.497 sys 3.382 real