succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 4s 1m 3s 0s 0s 0 bytes 94% 69.6 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 15s 13s 0s 1s 16.3 MB 99% 2.1 MB 5.6 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 15s 2s 3s 9s 435.1 MB 2440% 1.1 GB 4.5 MB 0 bytes 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 9m 28s 17s 6m 52s 2m 18s 1.5 GB 1146% 90.2 GB 27.6 MB 27.5 GB 716.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 14.0 MB 1149% 125.7 KB 23.5 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 42.1 MB 259% 3.4 GB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 16.2 MB 2304% 24.0 MB 24.0 MB 0 bytes 24.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 2m 1s 1m 41s 9s 10s 32.4 MB 124% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 10s 8s 1s 1s 21.3 MB 1650% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 19s 3s 7s 8s 37.7 MB 287% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 20.8 MB 3382% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 1s 2s 16.8 MB 1165% 22.8 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 2s 1s 145.5 MB 297% 20.6 MB 4.1 MB 0 bytes 4.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 6m 29s 8s 3s 6m 17s 641.3 MB 302% 90.1 MB 296.7 KB 98.4 MB 80.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 5s 3s - - 9.2 MB 129% 1.6 MB 153.4 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 15s 2s 1s 11s 19.7 MB 437% 19.0 MB 3.9 MB 3.8 MB 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 9s 8s 57s 4s 7.5 GB 316% 641.1 MB 17.3 MB 32.0 KB 14.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 6.1 MB 107% 15.4 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 9s 3s 3s 2s 386.7 MB 244% 23.0 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 16s 12s 1s 2s 115.4 MB 364% 19.3 MB 3.4 MB 0 bytes 3.4 MB 1
253 items found |
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