File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e25d5df774528bd0ee3cd418fea5bf/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/4a6ffe8c031a7aa2805fbe89074d68/659_bTo-N1-BDNA-1_B23KFG5LT4_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e25d5df774528bd0ee3cd418fea5bf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/3acc475aea47cced00a9d2f7f36181/659_bTo-N1-BDNA-1_B23KFG5LT4_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e25d5df774528bd0ee3cd418fea5bf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/4a6ffe8c031a7aa2805fbe89074d68/659_bTo-N1-BDNA-1_B23KFG5LT4_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/3acc475aea47cced00a9d2f7f36181/659_bTo-N1-BDNA-1_B23KFG5LT4_1.dv_rescue.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   30947 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   123 PASS INDELs in DeepVariant VCF
INFO:   3 novel positions (not in Sentieon) -> written to 659_bTo-N1-BDNA-1_B23KFG5LT4_1.dv_only_sites.vcf.gz