succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 30s 29s 0s 0s 0 bytes 200% 69.7 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 18.8 MB 97% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 16s 1s 3s 11s 426.0 MB 2075% 1.1 GB 4.5 MB 0 bytes 27.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 11m 48s 32s 8m 35s 2m 40s 1.6 GB 1151% 104.5 GB 32.3 MB 32.2 GB 720.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 16.8 MB 1131% 124.6 KB 22.4 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 44.9 MB 284% 3.4 GB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 28.5 MB 2627% 25.7 MB 25.7 MB 0 bytes 25.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 13s 53s 10s 9s 28.6 MB 122% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 7s 4s 1s 2s 127.9 MB 158% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.5 MB 252% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 21.3 MB 4960% 8.1 MB 8.1 MB 0 bytes 8.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 1s 2s 79.7 MB 1098% 23.0 MB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 2s 2s 233.0 MB 279% 20.8 MB 4.2 MB 0 bytes 4.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 5m 12s 8s 4s 4m 59s 480.1 MB 494% 120.7 MB 285.4 KB 131.1 MB 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_dc8-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 2s - - 9.3 MB 132% 1.7 MB 155.7 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 41s 10s 1s 29s 15.5 MB 423% 18.9 MB 4.0 MB 4.0 MB 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 21s 2s 1m 16s 3s 6.8 GB 212% 643.1 MB 17.4 MB 0 bytes 14.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_dc8-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 1s - - 6.3 MB 100% 15.6 MB 2.7 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 8s 2s 3s 2s 387.6 MB 248% 23.2 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_dc8-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 1s 2s 118.2 MB 345% 19.5 MB 3.4 MB 0 bytes 3.4 MB 1
255 items found |
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