succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 16s 14s 0s 1s 0 bytes 100% 69.6 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 15s 12s 0s 2s 18.8 MB 96% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 15s 1s 3s 10s 632.1 MB 4721% 1.2 GB 4.4 MB 64.0 KB 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 10m 37s 23s 7m 39s 2m 34s 1.6 GB 1147% 100.7 GB 29.4 MB 30.9 GB 717.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 10.8 MB 1125% 124.8 KB 22.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 37.4 MB 263% 3.4 GB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 21.8 MB 2652% 24.7 MB 24.7 MB 0 bytes 24.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 50s 31s 9s 9s 30.2 MB 122% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 9s 6s 2s 1s 128.1 MB 206% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 43.0 MB 282% 3.5 GB 2.0 MB 0 bytes 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 23.3 MB 3086% 8.0 MB 8.0 MB 0 bytes 8.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 2s 1s 78.3 MB 305% 22.7 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 2s 2s 145.6 MB 297% 20.5 MB 4.0 MB 0 bytes 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 5m 37s 8s 1s 5m 27s 213.5 MB 85% 29.6 MB 286.8 KB 40.9 MB 60.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_eeB-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 3s - - 9.3 MB 124% 1.6 MB 155.7 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 23s 3s 1s 18s 45.1 MB 404% 18.8 MB 3.9 MB 3.7 MB 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 21s 2s 1m 16s 3s 6.1 GB 207% 641.1 MB 17.2 MB 0 bytes 14.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_eeB-N1-BDNA-1_B23KFG5LT4_1;tnseq) 3s 2s - - 6.1 MB 106% 15.3 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 8s 3s 3s 1s 387.4 MB 248% 23.0 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_eeB-N1-BDNA-1_B23KFG5LT4_1) 17s 13s 1s 2s 117.6 MB 358% 19.3 MB 3.3 MB 0 bytes 3.3 MB 1
255 items found |
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