|
succeeded
|
COPY_INPUT_TO_OUTDIR (copy_input)
|
10s |
9s |
- |
- |
0 bytes |
58% |
69.5 KB |
497 bytes |
0 bytes |
4.0 KB |
1 |
|
failed
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER_SAME_GENE (rna_s1221_S42)
|
33s |
31s |
- |
- |
0 bytes |
58% |
56.5 KB |
1.3 KB |
0 bytes |
12.0 KB |
3 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1221_S42)
|
1m 6s |
25s |
32s |
9s |
4.1 GB |
100% |
4.3 GB |
596.0 KB |
0 bytes |
592.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA (rna_s1221_S42)
|
4s |
3s |
- |
- |
3.0 MB |
69% |
5.8 MB |
5.5 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA (rna_s1221_S42)
|
7s |
4s |
- |
- |
29.5 MB |
331% |
68.3 MB |
11.6 MB |
0 bytes |
11.6 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA (rna_s1221_S42)
|
1m 7s |
4s |
54s |
9s |
1.5 GB |
230% |
2.9 GB |
5.7 MB |
0 bytes |
5.7 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:STAR_FOR_ARRIBA (rna_s1221_S42)
|
3m 44s |
4s |
2m 7s |
1m 33s |
32.0 GB |
115% |
30.0 GB |
184.9 MB |
2.7 GB |
184.9 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42)
|
4s |
3s |
- |
- |
13.6 MB |
96% |
1.1 MB |
3.1 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (rna_s1221_S42)
|
5s |
4s |
0s |
0s |
14.4 MB |
97% |
1.1 MB |
1.0 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS (rna_s1221_S42)
|
1m 23s |
3s |
4s |
1m 15s |
473.9 MB |
337% |
71.2 MB |
2.0 MB |
58.0 MB |
2.0 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1221_S42)
|
9s |
4s |
3s |
2s |
727.9 MB |
230% |
24.1 MB |
4.2 MB |
0 bytes |
4.5 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf)
|
37s |
5s |
22s |
10s |
3.1 GB |
100% |
1.3 GB |
27.7 MB |
0 bytes |
27.7 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz)
|
5m 36s |
3s |
5m 27s |
6s |
2.7 GB |
101% |
1.7 GB |
605.9 MB |
0 bytes |
606.0 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1221_S42)
|
21s |
4s |
11s |
6s |
1.3 GB |
203% |
357.6 MB |
8.5 MB |
0 bytes |
8.5 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
|
5s |
4s |
0s |
0s |
14.5 MB |
2898% |
4.6 MB |
3.4 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1221_S42)
|
6s |
2s |
1s |
3s |
177.1 MB |
434% |
43.6 MB |
1.2 MB |
35.3 MB |
1.2 MB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (rna_s1221_S42)
|
7s |
4s |
2s |
1s |
49.5 MB |
776% |
32.4 MB |
1.2 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (rna_s1221_S42)
|
7s |
3s |
3s |
1s |
71.9 MB |
584% |
60.1 MB |
727 bytes |
0 bytes |
12.0 KB |
1 |
|
aborted
|
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INNERDISTANCE (rna_s1221_S42)
|
- |
19s |
- |
- |
- |
- |
- |
- |
- |
- |
1 |
|
aborted
|
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (rna_s1221_S42)
|
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
1 |