.command.sh - Workdir - NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (COLO829_c_0001_gDNA_0001_B23H2NLLT4_7)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/81555d7843e63f9f6f3d0ffb9589eb/.command.sh
Size: 361 bytes
Task: NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (COLO829_c_0001_gDNA_0001_B23H2NLLT4_7)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py COLO829_c_0001_gDNA_0001_B23H2NLLT4_7.recalibrated.bam.bai > COLO829_c_0001_gDNA_0001_B23H2NLLT4_7.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS