succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:EXTRACT_CHROMOSOMES_TNSEQ (custom_Sig_18_tumor_normal) 6s 4s 0s 1s 5.4 MB 3654% 117.6 KB 705 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:EXTRACT_CHROMOSOMES_TNSEQ (HCC1395_tumor_vs_HCC1395_BL) 5s 4s 0s 0s 5.5 MB 2358% 117.6 KB 705 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (custom_Sig_18_tumor_normal) 7s 5s - - 24.0 MB 7522% 302.3 KB 21.9 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (HCC1395_tumor_vs_HCC1395_BL) 4s 3s - - 23.8 MB 7338% 278.7 KB 21.3 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (custom_Sig_18_tumor_normal) 36s 22s 9s 4s 3.9 GB 694% 391.8 MB 19.7 MB 0 bytes 19.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (HCC1395_tumor_vs_HCC1395_BL) 33s 21s 7s 4s 3.8 GB 726% 298.7 MB 8.8 MB 0 bytes 8.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (custom_Sig_18_tumor_normal) 7s 3s - - 12.1 MB 111% 5.9 MB 1.8 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (HCC1395_tumor_vs_HCC1395_BL) 5s 2s - - 12.0 MB 116% 4.7 MB 1.8 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:N7_COSMIC_SIGS (custom_Sig_18_tumor_normal) 1m 17s 53s 22s 1s 1.2 GB 237% 97.0 MB 39.7 KB 0 bytes 68.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:N7_COSMIC_SIGS (HCC1395_tumor_vs_HCC1395_BL) 1m 9s 52s 15s 1s 914.5 MB 236% 89.3 MB 34.7 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (custom_Sig_18_tumor_normal) 37s 32s 2s 2s 338.9 MB 739% 41.8 MB 4.9 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (HCC1395_tumor_vs_HCC1395_BL) 38s 33s 2s 2s 339.1 MB 763% 41.8 MB 5.1 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (custom_Sig_18_tumor_normal) 1m 58s 52s 1m 2s 3s 2.9 GB 261% 693.3 MB 853.9 MB 0 bytes 856.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (HCC1395_tumor_vs_HCC1395_BL) 1m 55s 52s 59s 3s 2.8 GB 275% 692.3 MB 848.9 MB 0 bytes 851.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_PLTF (custom_Sig_18_tumor_normal) 1m 31s 51s 38s 1s 1.2 GB 329% 479.4 MB 235.6 MB 0 bytes 238.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_PLTF (HCC1395_tumor_vs_HCC1395_BL) 1m 32s 52s 37s 2s 1.2 GB 341% 477.9 MB 235.6 MB 0 bytes 238.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (custom_Sig_18_tumor_normal:chr21) 2m 13s 7s 1m 57s 9s 1.2 GB 100% 776.9 MB 1013.2 KB 0 bytes 1020.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (HCC1395_tumor_vs_HCC1395_BL:chr21) 46s 2s 35s 9s 411.7 MB 103% 415.6 MB 901.0 KB 130.1 MB 908.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL) 10s 2s 6s 1s 85.8 MB 569% 27.0 MB 727 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood) 22s 2s 17s 2s 87.1 MB 265% 29.5 MB 727 bytes 0 bytes 8.0 KB 1
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