succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 50s 36s 4s 9s 382.0 MB 279% 157.5 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 51s 34s 6s 10s 575.8 MB 195% 260.0 MB 4.5 MB 18.8 MB 4.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 26s 3s 13s 10s 496.1 MB 338% 4.1 GB 832.8 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 27s 2s 16s 9s 494.8 MB 315% 4.5 GB 847.2 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 32s 12s 10s 10s 419.8 MB 328% 3.9 GB 830.3 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 36s 12s 15s 9s 496.1 MB 282% 4.8 GB 851.1 KB 44.2 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 21s 11s - - 3.2 MB 3139% 12.1 MB 859.2 KB 0 bytes 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 34s 2s 22s 10s 1.9 GB 108% 167.1 MB 6.1 MB 155.4 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 34s 2s 23s 9s 1.9 GB 114% 333.5 MB 9.7 MB 317.8 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 34s 2s 22s 10s 1.9 GB 109% 213.4 MB 7.4 MB 145.7 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 37s 2s 26s 9s 1.9 GB 127% 720.7 MB 14.8 MB 694.5 MB 14.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 15s 2s 4s 9s 9.1 MB 133% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 20s 2s 9s 9s 9.1 MB 130% 318.0 MB 131.5 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 16s 2s 5s 9s 8.9 MB 130% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 30s 2s 19s 9s 9.2 MB 128% 694.7 MB 132.8 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL) 7s 6s 0s 0s 15.1 MB 2042% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood) 7s 6s 0s 0s 13.9 MB 2290% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:MULTIQC 49s 23s 19s 6s 1.0 GB 38% 83.3 MB 24.2 MB 0 bytes 23.8 MB 1
succeeded NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv) 4s 2s 0s 1s 13.8 MB 99% 1.7 MB 1.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta) 3s 2s - - 3.1 MB 771% 168.6 KB 19.4 KB 0 bytes 32.0 KB 1
304 items found |
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