Sample samtools_flagstat_stats-error_rate samtools_flagstat_stats-non_primary_alignments samtools_flagstat_stats-reads_mapped samtools_flagstat_stats-reads_mapped_percent samtools_flagstat_stats-reads_properly_paired_percent samtools_flagstat_stats-reads_MQ0_percent samtools_flagstat_stats-raw_total_sequences samtools_flagstat_stats-insert_size_average mosdepth-1_x_pc mosdepth-5_x_pc mosdepth-10_x_pc mosdepth-30_x_pc mosdepth-50_x_pc mosdepth-median_coverage bcftools_stats-number_of_records bcftools_stats-number_of_SNPs bcftools_stats-number_of_indels bcftools_stats-tstv bcftools_stats-number_of_MNPs bcftools_stats-number_of_multiallelic_sites bcftools_stats-number_of_multiallelic_SNP_sites snpeff-Change_rate snpeff-Ts_Tv_ratio snpeff-Number_of_variants_before_filter
HCC1395_BL 0.356765 0.0 1.322751 99.99954640194684 99.96991132914057 7.908179658092908 1.322757 283.6 100.0 100.0 100.0 100.0 99.0 149 4 0 0 0.0 0 0 0
HCC1395_BL.deconflicted_germline 355 334 21 3.58 0 0 0
HCC1395_BL.deconflicted_germline_custom.ann_snpEff 131577.0 3.460784 0.000355
HCC1395_BL_custom.ann_snpEff 193675569.0 0.0 4e-06
HCC1395_tumor 0.362003 0.0 3.617921 99.99977887902168 99.9660302897044 7.73320869480855 3.6179289999999997 273.5 100.0 100.0 100.0 100.0 100.0 334
HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv 0 0 0 0.0 0 0 0
HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff 0.0 0.0 0.0
HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv 0 0 0 0.0 0 0 0
HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff 0.0 0.0 0.0
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels 35 0 35 0.0 0 0 0
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff 1334570.0 0.0 3.5e-05
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs 369 369 0 0.88 0 0 0
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff 126585.0 0.882653 0.000369
Sig_18_Blood 0.3767457 0.0 1.685328 99.99976265804008 99.97911390752682 7.44470525688707 1.6853319999999998 291.0 100.0 100.0 100.0 100.0 99.0 195 4 0 0 0.0 0 0 0
Sig_18_Blood.deconflicted_germline 395 369 26 2.93 0 0 0
Sig_18_Blood.deconflicted_germline_custom.ann_snpEff 118253.0 2.864662 0.000395
Sig_18_Blood_custom.ann_snpEff 193675569.0 0.0 4e-06
Sig_18_tissue 0.3583898 0.0 9.108433 99.99962672093999 99.95612873165155 6.856982629458942 9.108467 230.1 100.0 100.0 100.0 100.0 100.0 839
custom_Sig_18_tumor_normal.manta.diploid_sv 1 0 1 0.0 0 0 0
custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff 46709983.0 0.0 1e-06
custom_Sig_18_tumor_normal.manta.somatic_sv 0 0 0 0.0 0 0 0
custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff 0.0 0.0 0.0
custom_Sig_18_tumor_normal.strelka.somatic_indels 66 0 66 0.0 0 0 0
custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff 707727.0 0.0 6.6e-05
custom_Sig_18_tumor_normal.strelka.somatic_snvs 265 265 0 0.98 0 0 0
custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff 176264.0 0.977612 0.000265