multiqc_data/multiqc_sources.txt - Workdir - NFCORE_SAREK:SAREK:MULTIQC

File Info

Filename: multiqc_data/multiqc_sources.txt
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/eea7cffad6ad43857ee9a84a319300/multiqc_data/multiqc_sources.txt
Size: 6.6 KB
Task: NFCORE_SAREK:SAREK:MULTIQC
Attempt
Content

Module	Section	Sample Name	Source
Samtools Flagstat	stats	HCC1395_BL	/tmp/nxf.waPUHPNmJI/5/HCC1395_BL.stats
Samtools Flagstat	stats	HCC1395_tumor	/tmp/nxf.waPUHPNmJI/6/HCC1395_tumor.stats
Samtools Flagstat	stats	Sig_18_Blood	/tmp/nxf.waPUHPNmJI/4/Sig_18_Blood.stats
Samtools Flagstat	stats	Sig_18_tissue	/tmp/nxf.waPUHPNmJI/3/Sig_18_tissue.stats
Mosdepth	genome_results	HCC1395_BL	/tmp/nxf.waPUHPNmJI/11/HCC1395_BL.mosdepth.region.dist.txt
Mosdepth	genome_results	HCC1395_tumor	/tmp/nxf.waPUHPNmJI/13/HCC1395_tumor.mosdepth.region.dist.txt
Mosdepth	genome_results	Sig_18_Blood	/tmp/nxf.waPUHPNmJI/9/Sig_18_Blood.mosdepth.region.dist.txt
Mosdepth	genome_results	Sig_18_tissue	/tmp/nxf.waPUHPNmJI/7/Sig_18_tissue.mosdepth.region.dist.txt
Bcftools	stats	HCC1395_BL	/tmp/nxf.waPUHPNmJI/42/HCC1395_BL.bcftools_stats.txt
Bcftools	stats	HCC1395_BL.deconflicted_germline	/tmp/nxf.waPUHPNmJI/48/HCC1395_BL.deconflicted_germline.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv	/tmp/nxf.waPUHPNmJI/40/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv	/tmp/nxf.waPUHPNmJI/39/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels	/tmp/nxf.waPUHPNmJI/43/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs	/tmp/nxf.waPUHPNmJI/44/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt
Bcftools	stats	Sig_18_Blood	/tmp/nxf.waPUHPNmJI/41/Sig_18_Blood.bcftools_stats.txt
Bcftools	stats	Sig_18_Blood.deconflicted_germline	/tmp/nxf.waPUHPNmJI/47/Sig_18_Blood.deconflicted_germline.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.manta.diploid_sv	/tmp/nxf.waPUHPNmJI/38/custom_Sig_18_tumor_normal.manta.diploid_sv.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.manta.somatic_sv	/tmp/nxf.waPUHPNmJI/37/custom_Sig_18_tumor_normal.manta.somatic_sv.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.strelka.somatic_indels	/tmp/nxf.waPUHPNmJI/45/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.strelka.somatic_snvs	/tmp/nxf.waPUHPNmJI/46/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt
Vcftools	all_sections	TsTv by counts	/tmp/nxf.waPUHPNmJI/58/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.count
Vcftools	all_sections	TsTv by quality	/tmp/nxf.waPUHPNmJI/82/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.qual
SNPeff	all_sections	HCC1395_BL.deconflicted_germline_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/88/HCC1395_BL.deconflicted_germline_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_BL_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/22/HCC1395_BL_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/19/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/20/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/30/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/29/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff.csv
SNPeff	all_sections	Sig_18_Blood.deconflicted_germline_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/87/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff.csv
SNPeff	all_sections	Sig_18_Blood_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/21/Sig_18_Blood_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/18/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/17/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/33/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff	/tmp/nxf.waPUHPNmJI/34/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.csv
VEP	all_sections	HCC1395_BL.deconflicted_germline_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/90/HCC1395_BL.deconflicted_germline_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_BL_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/28/HCC1395_BL_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/25/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/26/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/32/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/31/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/89/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	Sig_18_Blood_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/27/Sig_18_Blood_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/24/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/23/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/35/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann	/tmp/nxf.waPUHPNmJI/36/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html