|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue)
|
30s |
6s |
13s |
11s |
9.4 MB |
129% |
533.0 MB |
133.6 KB |
0 bytes |
136.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL)
|
2s |
1s |
0s |
0s |
18.1 MB |
4429% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood)
|
5s |
4s |
0s |
0s |
14.8 MB |
3421% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
43s |
20s |
14s |
8s |
1.0 GB |
202% |
82.4 MB |
23.1 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
|
3s |
1s |
0s |
1s |
17.8 MB |
102% |
1.7 MB |
1.8 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
3s |
1s |
- |
- |
3.3 MB |
1506% |
169.8 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
7s |
4s |
1s |
2s |
3.3 MB |
1931% |
180.1 KB |
20.1 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
3s |
2s |
- |
- |
3.2 MB |
2242% |
179.7 KB |
25.5 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
3s |
1s |
- |
- |
3.1 MB |
1754% |
197.1 KB |
35.8 KB |
0 bytes |
44.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;germline_cnv)
|
7s |
5s |
- |
- |
3.3 MB |
1620% |
141.4 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;sentieon_haplotyper_rf)
|
3s |
1s |
- |
- |
12.8 MB |
2889% |
213.5 KB |
43.7 KB |
0 bytes |
52.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
6s |
5s |
1s |
0s |
3.3 MB |
5888% |
179.2 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
5s |
3s |
- |
- |
3.2 MB |
7500% |
179.9 KB |
19.7 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
3s |
1s |
- |
- |
3.1 MB |
2190% |
175.4 KB |
23.0 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
4s |
3s |
1s |
0s |
3.3 MB |
6724% |
212.3 KB |
39.4 KB |
0 bytes |
48.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;germline_cnv)
|
8s |
5s |
1s |
2s |
15.3 MB |
1586% |
144.2 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;sentieon_haplotyper_rf)
|
3s |
1s |
- |
- |
3.2 MB |
7429% |
227.4 KB |
46.3 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
6s |
4s |
- |
- |
3.1 MB |
7348% |
220.7 KB |
20.2 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
6s |
4s |
- |
- |
3.2 MB |
6382% |
219.7 KB |
19.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
4s |
2s |
- |
- |
3.2 MB |
7517% |
247.0 KB |
36.0 KB |
0 bytes |
44.0 KB |
1 |