succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (Sig_18_tissue_vs_Sig_18_Blood) 6s 3s 2s 0s 347.2 MB 851% 41.8 MB 5.0 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (HCC1395_tumor_vs_HCC1395_BL) 49s 36s 11s 1s 1.3 GB 302% 77.4 MB 11.3 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (Sig_18_tissue_vs_Sig_18_Blood) 15s 2s 11s 1s 1.2 GB 302% 77.5 MB 11.0 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2 (HCC1395_tumor_vs_HCC1395_BL) 43s 8s 27s 8s 156.2 MB 100% 315.5 MB 30.2 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2 (Sig_18_tissue_vs_Sig_18_Blood) 1m 24s 6s 1m 9s 9s 190.7 MB 100% 471.9 MB 33.5 KB 0 bytes 36.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 21s 1s 10s 10s 165.3 MB 329% 3.2 GB 809.6 KB 1.7 GB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 26s 4s 11s 11s 168.0 MB 328% 3.3 GB 817.7 KB 2.0 GB 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 26s 5s 10s 11s 171.2 MB 364% 3.2 GB 810.0 KB 3.1 GB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 27s 2s 16s 9s 160.3 MB 210% 3.4 GB 818.0 KB 3.3 GB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 20s 11s - - 3.3 MB 2742% 12.0 MB 829.5 KB 0 bytes 868.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 21s 4s 8s 9s 304.7 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 21s 3s 9s 9s 238.8 MB 117% 3.2 GB 5.0 MB 0 bytes 5.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 20s 3s 8s 9s 239.2 MB 109% 3.1 GB 4.1 MB 0 bytes 4.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 23s 2s 12s 9s 257.1 MB 141% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 23s 3s 9s 11s 101.7 MB 109% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 24s 2s 13s 9s 101.8 MB 117% 3.2 GB 287.7 KB 0 bytes 292.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 21s 2s 10s 9s 100.9 MB 111% 3.2 GB 287.2 KB 0 bytes 292.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 36s 2s 22s 12s 102.2 MB 128% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 21s 3s 8s 10s 537.1 MB 183% 3.1 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_tumor) 32s 2s 18s 12s 627.6 MB 199% 3.4 GB 245.3 MB 0 bytes 245.6 MB 1
615 items found |
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