|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (Sig_18_tissue_vs_Sig_18_Blood;chr21_5117103-5117231)
|
6m 16s |
3s |
5m 55s |
18s |
2.5 GB |
135% |
555.8 MB |
2.5 MB |
35.2 MB |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS (HCC1395_tumor_vs_HCC1395_BL)
|
7s |
3s |
2s |
2s |
246.7 MB |
311% |
95.8 MB |
714.2 KB |
0 bytes |
720.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS (Sig_18_tissue_vs_Sig_18_Blood)
|
7s |
2s |
3s |
2s |
242.3 MB |
321% |
95.8 MB |
715.6 KB |
0 bytes |
724.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (HCC1395_tumor_vs_HCC1395_BL)
|
7s |
3s |
2s |
2s |
244.2 MB |
316% |
95.9 MB |
722.0 KB |
0 bytes |
728.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (Sig_18_tissue_vs_Sig_18_Blood)
|
7s |
2s |
3s |
2s |
239.4 MB |
301% |
95.9 MB |
720.0 KB |
0 bytes |
728.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (HCC1395_tumor_vs_HCC1395_BL;chr21_44120631-44120778.bed)
|
49s |
7s |
33s |
9s |
125.1 MB |
50% |
232.7 MB |
1.9 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (HCC1395_tumor_vs_HCC1395_BL;chr21_5117103-5117231.bed)
|
1m 17s |
4s |
1m 4s |
9s |
416.5 MB |
118% |
1.6 GB |
1.9 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (Sig_18_tissue_vs_Sig_18_Blood;chr21_44120631-44120778.bed)
|
1m 0s |
3s |
48s |
9s |
145.8 MB |
66% |
245.5 MB |
1.9 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (Sig_18_tissue_vs_Sig_18_Blood;chr21_5117103-5117231.bed)
|
4m 0s |
3s |
3m 48s |
9s |
435.3 MB |
118% |
1.5 GB |
1.9 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER (HCC1395_tumor_vs_HCC1395_BL)
|
14s |
2s |
2s |
9s |
345.8 MB |
2672% |
18.2 MB |
337.0 KB |
0 bytes |
25.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER (Sig_18_tissue_vs_Sig_18_Blood)
|
13s |
2s |
2s |
8s |
343.1 MB |
2634% |
19.8 MB |
354.2 KB |
0 bytes |
25.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_tumor_vs_HCC1395_BL)
|
33s |
6s |
8s |
18s |
1.3 GB |
1004% |
2.6 GB |
554.3 KB |
0 bytes |
8.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (Sig_18_tissue_vs_Sig_18_Blood)
|
46s |
6s |
21s |
18s |
2.3 GB |
1076% |
2.6 GB |
1.5 MB |
0 bytes |
9.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (HCC1395_tumor_vs_HCC1395_BL)
|
58s |
3s |
48s |
7s |
223.6 MB |
110% |
1.6 GB |
20.9 KB |
0 bytes |
40.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (Sig_18_tissue_vs_Sig_18_Blood)
|
1m 4s |
3s |
54s |
7s |
583.1 MB |
110% |
1.7 GB |
21.1 KB |
0 bytes |
40.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM (HCC1395_tumor_vs_HCC1395_BL_normal)
|
19s |
2s |
3s |
14s |
99.7 MB |
211% |
220.1 MB |
106.6 MB |
0 bytes |
106.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM (HCC1395_tumor_vs_HCC1395_BL_tumor)
|
24s |
3s |
9s |
12s |
104.3 MB |
213% |
477.6 MB |
262.1 MB |
0 bytes |
262.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM (Sig_18_tissue_vs_Sig_18_Blood_normal)
|
19s |
3s |
5s |
11s |
99.2 MB |
215% |
262.0 MB |
132.3 MB |
0 bytes |
132.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SAMTOOLS_CONVERT_CRAM_TO_BAM (Sig_18_tissue_vs_Sig_18_Blood_tumor)
|
34s |
3s |
21s |
10s |
99.8 MB |
216% |
905.4 MB |
532.9 MB |
0 bytes |
533.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (HCC1395_tumor_vs_HCC1395_BL)
|
33s |
29s |
2s |
1s |
347.7 MB |
854% |
41.8 MB |
5.1 KB |
0 bytes |
20.0 KB |
1 |