Prefix: s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01
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| /reports/raw_qc/vcftools/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.TsTv.qual | Feb 02, 2026 10:29 PM | |
| /reports/raw_qc/vcftools/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.FILTER.summary | Feb 02, 2026 10:29 PM | |
| /variant_calling/whatshap/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.whatshap.phased.vcf.gz | Feb 02, 2026 10:29 PM | |
| /variant_calling/hrd/TiH/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.hrd.csv | Feb 02, 2026 10:29 PM | |
| /reports/raw_qc/bcftools/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.bcftools_stats.txt | Feb 02, 2026 10:29 PM | |
| /variant_calling/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.vcf.gz | Feb 02, 2026 10:29 PM | |
| /variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/somatic_matched/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.vcf.gz | Feb 02, 2026 10:29 PM | |
| /variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/somatic_matched/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.vcf.gz.tbi | Feb 02, 2026 10:29 PM | |
| /variant_calling/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.vcf.gz.tbi | Feb 02, 2026 10:29 PM | |
| /variant_calling/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.vcf.gz.stats | Feb 02, 2026 10:29 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz | Feb 02, 2026 10:28 PM | |
| /variant_calling/chip_variants/1029_BBS1-N1-BDNA-1_2375WFLT3_s23/somatic_matched/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz | Feb 02, 2026 10:28 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.filteringStats.tsv | Feb 02, 2026 10:28 PM | |
| /variant_calling/chip_variants/1029_BBS1-N1-BDNA-1_2375WFLT3_s23/somatic_matched/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.tbi | Feb 02, 2026 10:28 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.tbi | Feb 02, 2026 10:28 PM | |
| /variant_calling/chip_variants/1029_BBS1-N1-BDNA-1_2375WFLT3_s23/somatic_matched/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.filteringStats.tsv | Feb 02, 2026 10:28 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.artifactprior.tar.gz | Feb 02, 2026 10:27 PM | |
| /variant_calling/chip_variants/1029_BBS1-N1-BDNA-1_2375WFLT3_s23/somatic_matched/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.vcf.gz | Feb 02, 2026 10:17 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.vcf.gz.tbi | Feb 02, 2026 10:17 PM | |
| /variant_calling/mutect2/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.vcf.gz | Feb 02, 2026 10:17 PM |