|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
7m 46s |
2m 20s |
1m 41s |
3m 44s |
604.7 MB |
109% |
7.9 GB |
78.9 MB |
15.8 GB |
79.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BICA-T1-TDNA-1_23FC2GLT4_s33)
|
21m 0s |
2m 21s |
7m 45s |
10m 53s |
1.0 GB |
106% |
35.4 GB |
338.1 MB |
49.0 GB |
338.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
13m 45s |
1m 28s |
9m 48s |
2m 29s |
9.0 GB |
565% |
290.5 GB |
106.4 MB |
0 bytes |
85.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
13m 18s |
1m 28s |
9m 3s |
2m 47s |
8.5 GB |
514% |
257.2 GB |
106.3 MB |
0 bytes |
85.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
15m 0s |
1m 27s |
10m 44s |
2m 49s |
7.2 GB |
577% |
331.0 GB |
106.4 MB |
0 bytes |
85.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
15m 0s |
1m 28s |
10m 23s |
3m 9s |
7.3 GB |
577% |
311.8 GB |
106.4 MB |
0 bytes |
85.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
20s |
14s |
4s |
2s |
166.1 MB |
476% |
75.4 MB |
110.5 KB |
0 bytes |
124.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
21s |
16s |
4s |
1s |
168.8 MB |
653% |
75.4 MB |
119.6 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
18s |
13s |
4s |
1s |
166.6 MB |
303% |
75.4 MB |
120.9 KB |
0 bytes |
136.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
20s |
15s |
4s |
1s |
166.4 MB |
312% |
75.4 MB |
121.5 KB |
0 bytes |
136.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
18s |
13s |
3s |
2s |
127.7 MB |
278% |
75.3 MB |
141.7 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
19s |
14s |
3s |
2s |
131.9 MB |
251% |
75.4 MB |
159.1 KB |
0 bytes |
172.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
17s |
13s |
4s |
0s |
148.1 MB |
609% |
75.4 MB |
159.9 KB |
0 bytes |
176.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
17s |
13s |
4s |
0s |
142.8 MB |
590% |
75.4 MB |
160.3 KB |
0 bytes |
176.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
23s |
14s |
7s |
2s |
261.3 MB |
374% |
88.9 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
24s |
15s |
7s |
2s |
263.0 MB |
323% |
88.9 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
22s |
13s |
7s |
2s |
262.9 MB |
206% |
88.9 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
13s |
5s |
8s |
0s |
264.6 MB |
172% |
88.9 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
13m 7s |
18s |
11m 19s |
1m 30s |
911.3 MB |
1146% |
351.2 GB |
86.2 MB |
0 bytes |
82.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
11m 44s |
11s |
10m 9s |
1m 24s |
878.0 MB |
1097% |
303.3 GB |
85.7 MB |
9.1 GB |
81.7 MB |
1 |