succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 26s 25s 0s 0s 0 bytes 174% 124.4 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 3s 1s 0s 1s 18.4 MB 100% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 16s 1s 5s 9s 1.2 GB 7784% 1.2 GB 4.6 MB 13.8 MB 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 9m 51s 43s 6m 50s 2m 17s 1.5 GB 1144% 90.3 GB 27.6 MB 27.5 GB 716.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 4s 2s - - 10.7 MB 1166% 125.8 KB 23.5 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 20s 3s 7s 9s 41.6 MB 282% 3.4 GB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 3s 1s 1s 1s 20.7 MB 3636% 24.0 MB 24.0 MB 0 bytes 24.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 1m 21s 55s 8s 17s 47.5 MB 268% 4.0 GB 5.5 MB 1.0 GB 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 11s 9s 1s 1s 20.5 MB 1656% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 22s 5s 7s 9s 37.4 MB 281% 3.5 GB 2.0 MB 16.0 KB 2.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 3s 1s - - 21.1 MB 5202% 7.9 MB 7.9 MB 0 bytes 7.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 6s 2s 2s 1s 79.0 MB 318% 22.7 MB 3.5 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 4s 1s 1s 1s 226.6 MB 1071% 20.7 MB 4.1 MB 0 bytes 4.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 6m 3s 30s 3s 5m 29s 641.5 MB 305% 90.1 MB 296.6 KB 82.1 MB 80.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 2s - - 9.4 MB 135% 1.6 MB 153.4 KB 0 bytes 156.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 15s 5s 1s 8s 4.7 MB 735% 19.0 MB 3.9 MB 3.8 MB 3.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 17s 1s 1m 13s 3s 5.6 GB 207% 641.1 MB 17.3 MB 0 bytes 14.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_bTo-N1-BDNA-1_B23KFG5LT4_1;tnseq) 5s 3s - - 6.2 MB 107% 15.4 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 9s 5s 2s 1s 385.8 MB 408% 23.0 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 5s 1s 1s 2s 116.4 MB 1349% 19.3 MB 3.4 MB 0 bytes 3.4 MB 1
253 items found |
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