|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
6m 55s |
56s |
4m 27s |
1m 32s |
3.6 GB |
377% |
117.1 GB |
82.6 MB |
28.4 GB |
64.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
1s |
3s |
1s |
164.4 MB |
1013% |
75.4 MB |
106.8 KB |
0 bytes |
120.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
2s |
3s |
0s |
167.5 MB |
1239% |
75.4 MB |
133.9 KB |
0 bytes |
148.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
1s |
5s |
2s |
255.7 MB |
591% |
87.2 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7m 43s |
47s |
5m 16s |
1m 40s |
1009.7 MB |
1206% |
231.3 GB |
3.1 GB |
38.0 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
1s |
3s |
2s |
291.3 MB |
367% |
100.5 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
6m 21s |
1m 43s |
2m 35s |
2m 2s |
1.9 GB |
1192% |
22.3 GB |
3.5 MB |
6.0 GB |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
5m 48s |
1m 43s |
2m 2s |
2m 2s |
1.6 GB |
1187% |
20.3 GB |
3.4 MB |
6.4 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
4m 14s |
1m 43s |
29s |
2m 1s |
1.3 GB |
1155% |
4.3 GB |
851.1 KB |
312.4 MB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
6m 44s |
1m 43s |
3m 1s |
1m 59s |
2.2 GB |
1194% |
20.2 GB |
3.3 MB |
6.4 GB |
179.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
4m 1s |
42s |
1m 34s |
1m 44s |
1.7 GB |
1186% |
20.0 GB |
3.5 MB |
6.0 GB |
191.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
6s |
0s |
1s |
22.7 MB |
3271% |
10.1 MB |
18.6 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
4m 39s |
41s |
2m 12s |
1m 45s |
6.2 GB |
472% |
38.8 GB |
225.2 MB |
12.9 GB |
231.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
1s |
4s |
1s |
1.9 GB |
593% |
73.5 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
6s |
0s |
1s |
3.6 MB |
2917% |
11.3 MB |
8.7 MB |
0 bytes |
3.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL (659_bTo-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
1m 10s |
2s |
9s |
58s |
1.9 GB |
1041% |
5.7 GB |
135.4 KB |
1.4 GB |
10.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
9s |
1s |
4s |
3s |
1.7 GB |
635% |
91.5 MB |
3.0 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
19s |
2s |
7s |
9s |
41.5 MB |
284% |
3.5 GB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
4s |
3s |
0s |
0s |
3.6 MB |
597% |
1.6 MB |
49.7 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
2s |
2s |
1s |
109.3 MB |
1444% |
43.4 MB |
8.3 MB |
0 bytes |
8.3 MB |
1 |