|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (659_bTo-N1-BDNA-1_B23KFG5LT4_1;659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
3m 43s |
1s |
2m 29s |
1m 13s |
480.7 MB |
100% |
30.4 GB |
20.3 MB |
29.9 GB |
20.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (659_bTo-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper)
|
6s |
5s |
- |
- |
9.3 MB |
119% |
1.5 MB |
152.5 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
24s |
18s |
3s |
3s |
390.9 MB |
364% |
96.9 MB |
1.9 MB |
0 bytes |
1.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
9s |
1s |
6s |
2s |
463.4 MB |
206% |
121.1 MB |
29.9 MB |
0 bytes |
29.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
5m 2s |
1m 28s |
2m 35s |
59s |
928.7 MB |
549% |
11.4 GB |
3.1 GB |
8.7 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
6m 7s |
1m 42s |
2m 30s |
1m 55s |
922.8 MB |
851% |
12.3 GB |
3.1 GB |
9.2 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
3m 49s |
43s |
1m 22s |
1m 44s |
508.2 MB |
186% |
4.8 GB |
3.0 GB |
4.1 GB |
3.0 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
9m 47s |
1m 33s |
4m 29s |
3m 45s |
981.8 MB |
689% |
13.1 GB |
3.1 GB |
10.0 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
4m 18s |
42s |
1m 52s |
1m 44s |
911.7 MB |
808% |
11.9 GB |
3.1 GB |
8.9 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
4m 35s |
8s |
- |
- |
16.5 MB |
110% |
5.3 MB |
111.0 KB |
5.0 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_bTo-T1-TDNA-1_A23KC75LT4_1)
|
6m 55s |
2s |
- |
- |
20.5 MB |
90% |
6.5 MB |
112.4 KB |
6.2 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_bTo_pair)
|
35m 8s |
2s |
30m 44s |
4m 22s |
3.8 GB |
422% |
1.0 TB |
146.4 MB |
320.4 GB |
120.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_bTo_pair)
|
5s |
1s |
3s |
1s |
136.4 MB |
946% |
75.3 MB |
93.7 KB |
0 bytes |
108.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_bTo_pair)
|
4s |
1s |
2s |
1s |
167.6 MB |
1248% |
75.3 MB |
90.9 KB |
0 bytes |
104.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_bTo_pair)
|
7s |
1s |
5s |
1s |
255.2 MB |
633% |
87.0 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (659_bTo_pair)
|
2h 27m |
1m 33s |
2h 20m |
4m 55s |
15.3 GB |
132% |
864.0 GB |
738.4 GB |
130.9 GB |
8.3 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (659_bTo_pair)
|
22m 4s |
1s |
17m 41s |
4m 22s |
1.9 GB |
1167% |
655.9 GB |
3.1 GB |
190.4 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS (659_bTo_pair)
|
6s |
1s |
2s |
3s |
306.3 MB |
364% |
96.8 MB |
1.4 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (659_bTo_pair)
|
7s |
1s |
3s |
3s |
278.5 MB |
364% |
97.2 MB |
2.0 MB |
0 bytes |
2.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (659_bTo_pair;chr10_74133927-74134264.bed)
|
15m 59s |
1s |
11m 5s |
4m 53s |
1.1 GB |
436% |
18.5 GB |
3.0 GB |
17.0 GB |
3.0 GB |
1 |