|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (659_bTo-N1-BDNA-1_B23KFG5LT4_1;659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
4m 38s |
2s |
3m 19s |
1m 17s |
480.5 MB |
100% |
30.4 GB |
20.3 MB |
29.9 GB |
20.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (659_bTo-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper)
|
4s |
3s |
- |
- |
9.6 MB |
114% |
1.5 MB |
152.5 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
20s |
15s |
3s |
2s |
254.5 MB |
364% |
97.0 MB |
1.9 MB |
0 bytes |
1.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
38s |
21s |
14s |
3s |
461.1 MB |
210% |
121.1 MB |
29.9 MB |
0 bytes |
29.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
4m 48s |
1m 1s |
2m 36s |
1m 11s |
945.9 MB |
750% |
11.4 GB |
3.1 GB |
8.7 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
4m 18s |
1m 1s |
2m 6s |
1m 11s |
901.5 MB |
819% |
12.3 GB |
3.1 GB |
9.2 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
3m 34s |
27s |
1m 21s |
1m 46s |
483.4 MB |
193% |
4.8 GB |
3.0 GB |
4.1 GB |
3.0 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
4m 48s |
1m 1s |
2m 36s |
1m 11s |
937.1 MB |
813% |
13.1 GB |
3.1 GB |
10.1 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
4m 33s |
1m 0s |
2m 21s |
1m 12s |
912.4 MB |
801% |
11.9 GB |
3.1 GB |
9.0 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
2m 25s |
1m 8s |
- |
- |
16.7 MB |
104% |
5.3 MB |
111.0 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_bTo-T1-TDNA-1_A23KC75LT4_1)
|
6m 22s |
30s |
- |
- |
20.9 MB |
87% |
6.5 MB |
112.4 KB |
6.2 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_bTo_pair)
|
34m 51s |
1s |
30m 42s |
4m 8s |
3.8 GB |
423% |
1.0 TB |
146.4 MB |
317.9 GB |
120.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_bTo_pair)
|
5s |
1s |
2s |
2s |
167.4 MB |
1177% |
75.3 MB |
93.7 KB |
0 bytes |
108.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_bTo_pair)
|
5s |
2s |
3s |
0s |
168.2 MB |
1247% |
75.3 MB |
90.9 KB |
0 bytes |
104.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_bTo_pair)
|
6s |
1s |
3s |
2s |
252.9 MB |
710% |
87.0 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (659_bTo_pair)
|
2h 28m |
1m 31s |
2h 21m |
4m 59s |
15.3 GB |
133% |
864.0 GB |
738.4 GB |
130.7 GB |
8.3 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (659_bTo_pair)
|
21m 33s |
1s |
17m 26s |
4m 6s |
1.9 GB |
1179% |
655.9 GB |
3.1 GB |
190.5 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS (659_bTo_pair)
|
8s |
2s |
3s |
3s |
218.9 MB |
332% |
96.7 MB |
1.4 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (659_bTo_pair)
|
7s |
1s |
3s |
3s |
245.7 MB |
345% |
97.2 MB |
2.0 MB |
0 bytes |
2.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (659_bTo_pair;chr10_74133927-74134264.bed)
|
19m 40s |
2s |
14m 20s |
5m 18s |
1.2 GB |
454% |
18.5 GB |
3.0 GB |
17.5 GB |
3.0 GB |
1 |