|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7m 7s |
1m 17s |
4m 49s |
1m 1s |
4.3 GB |
360% |
117.1 GB |
82.6 MB |
40.0 GB |
64.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
20s |
15s |
4s |
1s |
172.8 MB |
667% |
75.4 MB |
106.8 KB |
0 bytes |
120.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
1s |
3s |
2s |
128.5 MB |
773% |
75.3 MB |
133.9 KB |
0 bytes |
148.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
23s |
15s |
7s |
1s |
254.1 MB |
429% |
87.2 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7m 46s |
1m 1s |
5m 34s |
1m 11s |
1008.6 MB |
1205% |
231.3 GB |
3.1 GB |
39.4 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
19s |
14s |
3s |
2s |
306.2 MB |
359% |
100.5 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
4m 17s |
1m 8s |
2m 0s |
1m 8s |
1.9 GB |
1190% |
22.4 GB |
3.5 MB |
4.9 GB |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
3m 50s |
1m 1s |
1m 37s |
1m 11s |
1.6 GB |
1173% |
20.4 GB |
3.4 MB |
6.3 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
2m 37s |
1m 1s |
24s |
1m 11s |
1.2 GB |
1128% |
4.4 GB |
851.0 KB |
196.4 MB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
4m 37s |
1m 1s |
2m 24s |
1m 11s |
1.9 GB |
1182% |
20.3 GB |
3.3 MB |
6.1 GB |
179.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_bTo-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
4m 6s |
1m 0s |
1m 54s |
1m 11s |
1.6 GB |
1178% |
20.0 GB |
3.5 MB |
6.1 GB |
191.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
5s |
0s |
1s |
17.7 MB |
3073% |
10.2 MB |
18.6 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (659_bTo-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
5m 4s |
1m 20s |
2m 29s |
1m 14s |
3.3 GB |
451% |
38.8 GB |
225.9 MB |
11.5 GB |
232.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
17s |
9s |
5s |
2s |
1.9 GB |
191% |
73.4 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
8s |
6s |
0s |
1s |
3.5 MB |
3186% |
11.3 MB |
8.7 MB |
0 bytes |
3.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL (659_bTo-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
1m 20s |
2s |
10s |
1m 7s |
1.9 GB |
1048% |
5.7 GB |
132.1 KB |
1.8 GB |
10.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
2s |
4s |
3s |
1.8 GB |
594% |
91.4 MB |
3.0 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
19s |
2s |
7s |
9s |
40.5 MB |
257% |
3.5 GB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
3s |
0s |
1s |
18.5 MB |
1081% |
1.6 MB |
49.7 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (659_bTo-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
3s |
2s |
1s |
109.4 MB |
1393% |
43.4 MB |
8.3 MB |
0 bytes |
8.3 MB |
1 |