succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (659_bTo_pair:chr8) 12m 25s 1s 7m 6s 5m 18s 1.2 GB 100% 5.1 GB 1.2 MB 5.0 GB 1.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (659_bTo_pair:chr9) 16m 36s 3s 9m 24s 7m 9s 1.3 GB 100% 5.1 GB 1.3 MB 4.0 GB 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (659_bTo_pair:chrX) 12m 18s 2s 7m 3s 5m 13s 1021.1 MB 100% 5.3 GB 1.0 MB 161.0 MB 1.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 55s 54s 0s 0s 12.9 MB 98% 4.9 MB 440 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_bTo-T1-TDNA-1_A23KC75LT4_1) 56s 54s 0s 1s 12.8 MB 99% 6.0 MB 441 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 8m 14s 8s 5m 22s 2m 43s 1.9 GB 269% 50.5 GB 26.3 GB 24.5 GB 922.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 7m 37s 31s 7m 1s 4s 3.1 GB 110% 462.3 MB 18.8 MB 0 bytes 18.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 13s 12s 0s 0s 13.7 MB 114% 999.2 KB 2.0 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:SEQTK_SAMPLE (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 16s 2s 11s 3s 60.3 MB 102% 308.7 MB 66.6 MB 0 bytes 18.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (659_bTo-T1-TDNA-1_A23KC75LT4_1_vs_659_bTo-N1-BDNA-1_B23KFG5LT4_1) 15m 51s 2s 15m 46s 2s 114.5 MB 103% 302.3 MB 1.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 3m 5s 41s 51s 1m 32s 817.5 MB 113% 5.2 GB 59.1 MB 10.9 GB 60.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (659_bTo-T1-TDNA-1_A23KC75LT4_1) 9m 6s 41s 2m 44s 5m 40s 1.3 GB 107% 15.8 GB 219.7 MB 26.9 GB 220.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (659_bTo-N1-BDNA-1_B23KFG5LT4_1;SNP_GRCh38_hg38_wChr) 4m 54s 33s 2m 39s 1m 42s 577.1 MB 121% 30.4 GB 11.8 MB 30.3 GB 1.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (659_bTo-T1-TDNA-1_A23KC75LT4_1;SNP_GRCh38_hg38_wChr) 15m 41s 1m 7s 9m 20s 5m 14s 577.2 MB 106% 109.9 GB 12.4 MB 109.9 GB 1.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 12s 2s 1s 9s 5.2 MB 1576% 17.9 MB 6.9 MB 0 bytes 6.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 4m 56s 33s 2m 40s 1m 43s 1.9 GB 259% 24.8 GB 610.3 MB 24.5 GB 611.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (659_bTo-T1-TDNA-1_A23KC75LT4_1) 14m 48s 27s 8m 23s 5m 58s 1.9 GB 302% 104.5 GB 1.2 GB 104.1 GB 1.2 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 10m 2s 1m 8s 7m 48s 1m 6s 11.1 MB 134% 24.5 GB 166.5 KB 24.5 GB 168.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (659_bTo-T1-TDNA-1_A23KC75LT4_1) 43m 12s 1m 8s 36m 50s 5m 14s 11.1 MB 132% 104.0 GB 174.6 KB 104.1 GB 176.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (659_bTo-N1-BDNA-1_B23KFG5LT4_1) 3s 2s 0s 0s 18.4 MB 2364% 15.2 MB 21.6 KB 0 bytes 32.0 KB 1
253 items found |
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