succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 11s 10s 0s 0s 0 bytes 213% 69.6 KB 1.1 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 15s 12s 0s 2s 18.7 MB 97% 2.1 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 15s 1s 3s 10s 458.5 MB 3644% 1.6 GB 6.7 MB 0 bytes 29.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 12m 38s 1m 26s 8m 33s 2m 38s 1.7 GB 1150% 102.7 GB 36.3 MB 31.8 GB 722.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 4s 2s - - 18.0 MB 1129% 129.3 KB 27.1 KB 0 bytes 36.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 38.7 MB 259% 3.6 GB 5.2 MB 0 bytes 5.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 4s 2s 1s 1s 22.5 MB 1960% 34.8 MB 34.9 MB 0 bytes 34.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 37s 16s 10s 10s 28.3 MB 123% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 7s 4s 1s 2s 32.4 MB 163% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 19s 2s 7s 9s 37.8 MB 285% 3.6 GB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 4s 2s - - 19.9 MB 3230% 9.5 MB 9.6 MB 0 bytes 9.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 8s 3s 2s 2s 78.2 MB 268% 28.9 MB 5.6 MB 0 bytes 5.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 3s 1s 276.7 MB 256% 25.4 MB 6.6 MB 0 bytes 6.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SENTIEON_GENOTYPE (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 4m 48s 8s 3s 4m 36s 1005.1 MB 566% 222.9 MB 330.4 KB 261.7 MB 144.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf) 4s 3s 1s 0s 9.0 MB 142% 1.9 MB 176.8 KB 0 bytes 180.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TRANSFER_CALLER_AD (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 14s 2s 1s 10s 45.4 MB 349% 24.4 MB 6.3 MB 6.3 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 1m 25s 1s 1m 21s 3s 5.7 GB 218% 642.2 MB 25.8 MB 0 bytes 22.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (659_dRe-N1-BDNA-1_B23KFG5LT4_1;tnseq) 4s 2s - - 6.0 MB 109% 25.0 MB 4.3 MB 0 bytes 4.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 7s 2s 3s 1s 387.5 MB 236% 27.1 MB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (659_dRe-N1-BDNA-1_B23KFG5LT4_1) 7s 3s 2s 1s 132.2 MB 287% 23.5 MB 5.4 MB 0 bytes 5.4 MB 1
253 items found |
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