|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
9m 2s |
1m 53s |
5m 35s |
1m 34s |
4.5 GB |
367% |
139.5 GB |
82.8 MB |
48.7 GB |
65.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
14s |
10s |
3s |
1s |
163.5 MB |
949% |
75.4 MB |
104.7 KB |
0 bytes |
120.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
2s |
3s |
1s |
133.5 MB |
772% |
75.3 MB |
128.2 KB |
0 bytes |
144.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
2s |
7s |
1s |
253.2 MB |
396% |
87.2 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
9m 9s |
1m 38s |
6m 17s |
1m 14s |
1.0 GB |
1156% |
261.2 GB |
3.1 GB |
47.0 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
2s |
3s |
2s |
254.9 MB |
366% |
101.5 MB |
2.9 MB |
0 bytes |
2.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
5m 35s |
1m 38s |
2m 43s |
1m 13s |
2.1 GB |
1182% |
26.9 GB |
4.1 MB |
7.1 GB |
189.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
5m 17s |
1m 44s |
2m 0s |
1m 32s |
1.8 GB |
1181% |
23.6 GB |
3.8 MB |
7.3 GB |
195.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
3m 56s |
1m 44s |
45s |
1m 26s |
1.4 GB |
1163% |
5.1 GB |
1.0 MB |
170.0 MB |
38.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
6m 25s |
1m 43s |
2m 57s |
1m 44s |
2.2 GB |
1188% |
23.4 GB |
3.8 MB |
8.3 GB |
179.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
5m 37s |
1m 43s |
2m 17s |
1m 36s |
1.9 GB |
1185% |
23.2 GB |
4.0 MB |
7.1 GB |
191.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
8s |
0s |
1s |
12.6 MB |
548% |
10.5 MB |
18.7 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
8m 10s |
1m 19s |
3m 57s |
2m 53s |
6.4 GB |
366% |
40.9 GB |
232.8 MB |
11.5 GB |
241.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
11s |
3s |
5s |
2s |
1.8 GB |
190% |
74.4 MB |
2.1 MB |
0 bytes |
2.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
3s |
0s |
2s |
3.5 MB |
389% |
13.5 MB |
10.5 MB |
0 bytes |
4.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL (659_dRe-N1-BDNA-1_B23KFG5LT4_1;germline_rescue_targets)
|
1m 26s |
1s |
9s |
1m 15s |
2.0 GB |
1042% |
6.7 GB |
128.8 KB |
1.7 GB |
10.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
9s |
1s |
5s |
2s |
1.7 GB |
565% |
93.6 MB |
3.5 MB |
0 bytes |
3.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
19s |
2s |
7s |
9s |
45.0 MB |
275% |
3.6 GB |
2.0 MB |
0 bytes |
2.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
3s |
0s |
1s |
35.5 MB |
8224% |
2.0 MB |
56.4 KB |
0 bytes |
60.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
3s |
3s |
0s |
102.8 MB |
1253% |
46.7 MB |
10.2 MB |
0 bytes |
10.2 MB |
1 |