|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (659_dRe-N1-BDNA-1_B23KFG5LT4_1;659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
4m 32s |
2s |
2m 54s |
1m 36s |
480.9 MB |
100% |
35.0 GB |
27.2 MB |
34.4 GB |
27.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (659_dRe-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper)
|
5s |
3s |
- |
- |
9.1 MB |
138% |
1.8 MB |
176.5 KB |
0 bytes |
180.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
6s |
2s |
3s |
1s |
246.1 MB |
374% |
97.2 MB |
2.1 MB |
0 bytes |
2.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
1s |
6s |
3s |
665.9 MB |
231% |
125.4 MB |
34.7 MB |
0 bytes |
34.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr14_64122012-64122133.bed)
|
6m 29s |
1m 38s |
3m 35s |
1m 16s |
994.2 MB |
633% |
12.6 GB |
3.1 GB |
9.9 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr1_69091-70008.bed)
|
5m 17s |
1m 43s |
2m 20s |
1m 14s |
956.8 MB |
806% |
13.3 GB |
3.1 GB |
10.1 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr19_47340800-47341813.bed)
|
5m 4s |
7s |
2m 44s |
2m 13s |
516.5 MB |
213% |
5.0 GB |
3.1 GB |
4.4 GB |
3.0 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr4_30730753-30730788.bed)
|
5m 42s |
1m 38s |
2m 50s |
1m 14s |
960.7 MB |
873% |
14.1 GB |
3.1 GB |
11.3 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (659_dRe-N1-BDNA-1_B23KFG5LT4_1;chr8_93795409-93795507.bed)
|
5m 35s |
1m 43s |
2m 35s |
1m 17s |
930.9 MB |
822% |
12.9 GB |
3.1 GB |
9.9 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_dRe-N1-BDNA-1_B23KFG5LT4_1)
|
2m 20s |
5s |
- |
- |
14.0 MB |
112% |
5.4 MB |
111.2 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_dRe-T1-TDNA-1_A23KC75LT4_1)
|
5m 51s |
5s |
- |
- |
13.7 MB |
104% |
6.2 MB |
112.1 KB |
5.8 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (659_dRe_pair)
|
30m 40s |
2s |
26m 56s |
3m 42s |
3.6 GB |
399% |
902.3 GB |
146.4 MB |
269.8 GB |
120.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (659_dRe_pair)
|
8s |
3s |
4s |
1s |
127.9 MB |
176% |
75.3 MB |
106.9 KB |
0 bytes |
120.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (659_dRe_pair)
|
9s |
3s |
4s |
2s |
166.4 MB |
174% |
75.3 MB |
104.0 KB |
0 bytes |
120.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (659_dRe_pair)
|
12s |
3s |
7s |
2s |
252.6 MB |
143% |
87.0 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (659_dRe_pair)
|
1h 51m |
2m 25s |
1h 44m |
4m 22s |
13.1 GB |
141% |
750.1 GB |
640.0 GB |
115.1 GB |
7.9 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (659_dRe_pair)
|
20m 38s |
3s |
16m 57s |
3m 38s |
1.9 GB |
1061% |
572.5 GB |
3.1 GB |
166.9 GB |
3.1 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS (659_dRe_pair)
|
6s |
1s |
2s |
3s |
290.2 MB |
350% |
96.7 MB |
1.3 MB |
0 bytes |
1.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (659_dRe_pair)
|
7s |
2s |
3s |
2s |
291.5 MB |
368% |
97.6 MB |
2.3 MB |
0 bytes |
2.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (659_dRe_pair;chr10_74133927-74134264.bed)
|
15m 27s |
2s |
10m 6s |
5m 19s |
1017.3 MB |
318% |
16.1 GB |
3.0 GB |
14.6 GB |
3.0 GB |
1 |