succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 27s 8s 9s 9s 32.3 MB 130% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 5s 2s 1s 2s 132.2 MB 587% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
aborted NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (FFPE_HD789_01_p1_gDNA_0001_A23L3H3LT4_1) - - - - - - - - - - 3
aborted NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1) - - - - - - - - - - 3
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr1_69091-70008) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr19_47340800-47341813) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr8_93795409-93795507) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr1_69091-70008) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr19_47340800-47341813) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr8_93795409-93795507) - - - - - - - - - - 3
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr14_64122012-64122133.bed) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr1_69091-70008.bed) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr19_47340800-47341813.bed) - - - - - - - - - - 2
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (NA12878_c_0002_gDNA_0003_B23KYWJLT4_1;chr4_30730753-30730788.bed) - - - - - - - - - - 2
50 items found |
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