|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue)
|
27s |
1s |
16s |
10s |
9.2 MB |
128% |
694.7 MB |
132.8 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL)
|
3s |
1s |
0s |
1s |
16.9 MB |
4174% |
11.2 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood)
|
7s |
5s |
0s |
1s |
18.2 MB |
4417% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
53s |
24s |
19s |
9s |
1.0 GB |
54% |
84.1 MB |
25.0 MB |
0 bytes |
24.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
|
3s |
1s |
0s |
1s |
17.9 MB |
96% |
1.7 MB |
1.3 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
13.4 MB |
3330% |
173.7 KB |
20.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
3s |
1s |
- |
- |
3.3 MB |
5316% |
174.3 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
3s |
1s |
1s |
1s |
17.8 MB |
7938% |
205.5 KB |
34.5 KB |
0 bytes |
44.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
3s |
1s |
- |
- |
3.2 MB |
7312% |
191.5 KB |
26.8 KB |
0 bytes |
40.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;germline_cnv)
|
8s |
6s |
- |
- |
13.9 MB |
2944% |
134.1 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;sentieon_haplotyper_rf)
|
4s |
2s |
- |
- |
3.1 MB |
8058% |
222.4 KB |
43.5 KB |
0 bytes |
52.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;snv_indel)
|
4s |
2s |
- |
- |
17.9 MB |
7524% |
347.8 KB |
108.3 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
5s |
3s |
- |
- |
3.2 MB |
6983% |
180.7 KB |
20.3 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
4s |
2s |
- |
- |
13.5 MB |
4521% |
172.2 KB |
19.8 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
3s |
1s |
- |
- |
3.3 MB |
6749% |
187.1 KB |
23.4 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
4s |
2s |
- |
- |
17.9 MB |
7169% |
213.0 KB |
36.4 KB |
0 bytes |
48.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;germline_cnv)
|
5s |
3s |
- |
- |
3.1 MB |
6162% |
141.5 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;sentieon_haplotyper_rf)
|
3s |
1s |
- |
- |
3.3 MB |
7525% |
228.8 KB |
46.2 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;snv_indel)
|
3s |
1s |
- |
- |
18.0 MB |
7910% |
379.7 KB |
124.0 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
3.3 MB |
7234% |
223.8 KB |
20.7 KB |
0 bytes |
32.0 KB |
1 |