succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (custom_Sig_18_tumor_normal:chr21) 2m 54s 9s 2m 36s 9s 1.2 GB 100% 776.9 MB 1013.2 KB 0 bytes 1.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (HCC1395_tumor_vs_HCC1395_BL:chr21) 1m 18s 9s 1m 0s 9s 456.5 MB 100% 415.6 MB 901.0 KB 0 bytes 908.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL) 8s 2s 4s 1s 85.7 MB 697% 27.0 MB 718 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood) 14s 1s 11s 1s 87.3 MB 317% 29.5 MB 718 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 47s 33s 2s 11s 362.1 MB 311% 147.6 MB 1.3 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor) 45s 31s 3s 10s 589.6 MB 271% 183.0 MB 2.2 MB 0 bytes 2.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 46s 32s 2s 11s 334.6 MB 276% 157.6 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 48s 32s 5s 10s 718.4 MB 205% 260.0 MB 4.5 MB 35.5 MB 4.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 25s 3s 12s 10s 480.2 MB 176% 4.1 GB 832.8 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 26s 3s 12s 11s 499.1 MB 299% 4.5 GB 847.2 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 23s 3s 10s 10s 419.5 MB 361% 3.9 GB 830.3 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 25s 1s 14s 10s 498.4 MB 259% 4.8 GB 851.1 KB 25.7 MB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 23s 13s 1s 9s 3.2 MB 3128% 12.1 MB 859.2 KB 0 bytes 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 41s 5s 25s 11s 2.8 GB 106% 167.0 MB 6.1 MB 151.2 MB 6.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 41s 3s 27s 11s 1.9 GB 112% 333.5 MB 9.7 MB 306.6 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 36s 2s 25s 9s 2.8 GB 107% 213.3 MB 7.4 MB 198.8 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 41s 2s 29s 10s 1.9 GB 124% 721.0 MB 14.8 MB 690.4 MB 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 13s 1s 3s 9s 9.1 MB 132% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 23s 2s 8s 13s 9.0 MB 128% 318.0 MB 131.5 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 16s 2s 3s 11s 9.2 MB 133% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
332 items found |
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