succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (Sig_18_Blood;Sig_18_Blood) 20s 2s 9s 9s 74.4 MB 100% 3.2 GB 405.8 KB 0 bytes 412.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (Sig_18_Blood;Sig_18_Blood) 20s 2s 9s 9s 27.9 MB 100% 3.2 GB 207.7 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (Sig_18_Blood;Sig_18_Blood) 20s 2s 9s 9s 75.5 MB 100% 3.2 GB 405.8 KB 0 bytes 412.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;haplotypecaller) 5s 3s - - 3.3 MB 124% 137.5 KB 5.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;manta) 4s 2s - - 3.2 MB 66% 117.0 KB 3.2 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;sentieon_haplotyper) 4s 3s - - 3.3 MB 127% 135.9 KB 5.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;strelka) 3s 2s - - 3.3 MB 69% 127.8 KB 5.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;haplotypecaller) 3s 2s - - 3.3 MB 137% 139.6 KB 5.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;manta) 3s 2s - - 3.1 MB 132% 117.2 KB 3.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;sentieon_haplotyper) 3s 2s - - 3.3 MB 71% 138.5 KB 5.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;strelka) 3s 2s - - 3.3 MB 132% 126.2 KB 5.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (HCC1395_BL) 43s 28s 6s 8s 700.1 MB 431% 198.1 MB 20.2 MB 0 bytes 20.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (Sig_18_Blood) 19s 3s 6s 9s 691.4 MB 432% 196.1 MB 20.2 MB 0 bytes 20.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (HCC1395_BL) 28s 3s 5s 20s 964.1 MB 257% 130.7 MB 745.6 KB 0 bytes 764.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (Sig_18_Blood) 28s 2s 5s 21s 1003.7 MB 253% 129.3 MB 748.1 KB 0 bytes 768.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (HCC1395_BL) 4s 2s 1s 1s 14.6 MB 103% 68.7 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (Sig_18_Blood) 5s 2s - - 14.8 MB 102% 84.9 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_tumor_vs_HCC1395_BL) 1m 13s 8s 55s 10s 4.0 GB 166% 6.9 GB 370.9 MB 0 bytes 370.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (Sig_18_tissue_vs_Sig_18_Blood) 1m 51s 2s 1m 39s 10s 4.0 GB 163% 9.8 GB 667.5 MB 0 bytes 667.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (HCC1395_tumor_vs_HCC1395_BL) 16s 12s 3s 1s 134.2 MB 910% 75.3 MB 68.3 KB 0 bytes 84.0 KB 1
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