|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr8_7667128-12234345)
|
15m 34s |
5s |
6m 10s |
9m 19s |
745.9 MB |
108% |
1.8 GB |
808.4 KB |
1.6 GB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr8_85714223-145078636)
|
15m 15s |
5s |
5m 45s |
9m 25s |
850.6 MB |
108% |
1.4 GB |
808.0 KB |
1.2 GB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr9_10001-41225986)
|
11m 9s |
1m 28s |
3m 56s |
5m 45s |
732.2 MB |
111% |
1.3 GB |
806.9 KB |
1.1 GB |
832.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr9_134185537-138334717)
|
16m 52s |
6s |
5m 10s |
11m 36s |
695.1 MB |
108% |
1.2 GB |
807.7 KB |
1.1 GB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr9_43282957-43332174)
|
12m 6s |
37s |
16s |
11m 13s |
633.5 MB |
204% |
186.0 MB |
802.3 KB |
120.9 MB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chr9_64185014-64215162)
|
22m 21s |
1m 0s |
10m 34s |
10m 47s |
751.0 MB |
104% |
2.5 GB |
811.2 KB |
2.3 GB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_114331199-115738949)
|
6m 33s |
1m 27s |
21s |
4m 45s |
575.7 MB |
166% |
194.4 MB |
803.4 KB |
43.9 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_120929382-144425606)
|
7m 7s |
1m 27s |
48s |
4m 52s |
891.0 MB |
127% |
441.5 MB |
803.8 KB |
76.6 MB |
828.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_144475607-156030895)
|
7m 5s |
1m 27s |
53s |
4m 45s |
710.3 MB |
129% |
394.9 MB |
803.8 KB |
52.4 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_37285838-49348394)
|
8m 12s |
1m 26s |
53s |
5m 53s |
561.0 MB |
121% |
408.6 MB |
803.8 KB |
54.9 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_49528395-50228964)
|
12m 36s |
32s |
59s |
11m 5s |
1.1 GB |
139% |
341.2 MB |
803.9 KB |
143.1 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrX_58605580-62412542)
|
14m 7s |
34s |
2m 55s |
10m 38s |
944.3 MB |
113% |
944.0 MB |
806.1 KB |
123.6 MB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrY_20257794-21739542)
|
10m 59s |
18s |
15s |
10m 26s |
842.4 MB |
208% |
184.3 MB |
802.3 KB |
31.8 MB |
824.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrY_2781480-9046914)
|
11m 0s |
22s |
18s |
10m 20s |
702.5 MB |
210% |
143.8 MB |
802.3 KB |
32.2 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrY_56673215-56771509)
|
11m 49s |
13s |
9s |
11m 27s |
626.5 MB |
231% |
112.1 MB |
801.3 KB |
21.2 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;chrY_9453714-10266944)
|
8m 36s |
23s |
14s |
7m 59s |
764.3 MB |
200% |
186.1 MB |
803.3 KB |
38.7 MB |
820.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
19s |
2s |
3s |
14s |
482.0 MB |
320% |
111.9 MB |
807.3 KB |
0 bytes |
804.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
34s |
17s |
3s |
14s |
524.0 MB |
315% |
112.0 MB |
808.3 KB |
0 bytes |
804.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
23m 50s |
39s |
23m 8s |
2s |
122.7 MB |
102% |
440.5 MB |
1004 bytes |
0 bytes |
8.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
3m 22s |
1m 52s |
57s |
32s |
524.9 MB |
113% |
3.4 GB |
78.9 MB |
8.2 GB |
78.9 MB |
3 |