|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
9m 47s |
1m 54s |
4m 41s |
3m 11s |
842.2 MB |
105% |
14.0 GB |
338.2 MB |
28.7 GB |
338.4 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
9m 6s |
2m 5s |
5m 39s |
1m 22s |
5.5 GB |
449% |
58.0 GB |
216.0 MB |
0 bytes |
171.7 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
21s |
16s |
4s |
1s |
174.2 MB |
745% |
75.4 MB |
121.0 KB |
0 bytes |
136.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
8s |
4s |
3s |
1s |
137.8 MB |
943% |
75.4 MB |
217.4 KB |
0 bytes |
232.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
27s |
16s |
10s |
1s |
388.1 MB |
343% |
102.4 MB |
67.9 KB |
0 bytes |
84.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
4m 10s |
1m 41s |
1m 50s |
39s |
544.4 MB |
987% |
44.8 GB |
124.0 MB |
0 bytes |
131.2 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466)
|
3m 13s |
1m 33s |
46s |
54s |
997.4 MB |
259% |
171.2 MB |
1.2 MB |
10.7 MB |
1.2 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_38573339-38906036)
|
3m 24s |
1m 30s |
59s |
55s |
1.0 GB |
263% |
172.0 MB |
1.2 MB |
10.3 MB |
1.2 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200)
|
9m 40s |
2m 7s |
6m 55s |
38s |
2.3 GB |
246% |
683.1 MB |
1.9 MB |
15.3 MB |
1.9 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr1_10001-207666)
|
4m 13s |
1m 26s |
1m 58s |
49s |
930.5 MB |
233% |
246.5 MB |
1.2 MB |
146.2 MB |
1.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr1_13004385-16799163)
|
6m 34s |
1m 26s |
4m 19s |
49s |
1.8 GB |
227% |
300.4 MB |
1.3 MB |
201.2 MB |
1.4 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr1_143184588-223558935)
|
10m 22s |
1m 26s |
8m 12s |
44s |
2.2 GB |
240% |
796.6 MB |
2.0 MB |
597.0 MB |
2.0 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_51078349-54425074)
|
5m 34s |
2m 35s |
2m 21s |
38s |
1.1 GB |
234% |
315.1 MB |
1.3 MB |
10.2 MB |
1.4 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_60001-50821348)
|
8m 28s |
1m 52s |
5m 50s |
46s |
1.3 GB |
258% |
511.7 MB |
1.8 MB |
10.5 MB |
1.9 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_71055697-87978202)
|
4m 8s |
1m 52s |
1m 23s |
53s |
999.2 MB |
262% |
224.8 MB |
1.2 MB |
10.4 MB |
1.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr11_88002897-135076622)
|
7m 14s |
1m 52s |
4m 42s |
40s |
1.9 GB |
251% |
476.6 MB |
1.6 MB |
12.1 MB |
1.6 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr12_10001-7083650)
|
4m 19s |
1m 51s |
1m 37s |
51s |
1.2 GB |
267% |
187.1 MB |
1.2 MB |
9.9 MB |
1.2 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr1_223608936-228558364)
|
5m 6s |
1m 27s |
2m 52s |
47s |
1.5 GB |
250% |
310.3 MB |
1.4 MB |
146.4 MB |
1.4 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr12_34829238-37185252)
|
11m 12s |
1m 52s |
8m 28s |
52s |
1.4 GB |
242% |
874.1 MB |
2.1 MB |
14.1 MB |
2.2 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr12_7084651-34719407)
|
7m 56s |
1m 50s |
5m 16s |
50s |
1.2 GB |
259% |
370.8 MB |
1.5 MB |
11.1 MB |
1.5 MB |
2 |