Prefix: s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01
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| /reports/raw_qc/vcftools/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.TsTv.count | Feb 02, 2026 6:52 PM | |
| /reports/raw_qc/vcftools/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.FILTER.summary | Feb 02, 2026 6:52 PM | |
| /reports/raw_qc/bcftools/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_indels.bcftools_stats.txt | Feb 02, 2026 6:52 PM | |
| /reports/raw_qc/bcftools/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.bcftools_stats.txt | Feb 02, 2026 6:52 PM | |
| /variant_calling/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_indels.vcf.gz | Feb 02, 2026 6:51 PM | |
| /variant_calling/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.vcf.gz | Feb 02, 2026 6:51 PM | |
| /variant_calling/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_indels.vcf.gz.tbi | Feb 02, 2026 6:51 PM | |
| /variant_calling/strelka/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.vcf.gz.tbi | Feb 02, 2026 6:51 PM | |
| /reports/raw_qc/samtools/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23.recal.cram.stats | Feb 02, 2026 6:48 PM | |
| /variant_calling/chip_variants/1029_BG5-N1-BDNA-1_2375WFLT3_s29/1029_BG5-N1-BDNA-1_2375WFLT3_s29.chip_candidates.vcf.gz | Feb 02, 2026 6:46 PM | |
| /variant_calling/chip_variants/1029_BG5-N1-BDNA-1_2375WFLT3_s29/1029_BG5-N1-BDNA-1_2375WFLT3_s29.chip_candidates.vcf.gz.tbi | Feb 02, 2026 6:46 PM | |
| /reports/raw_qc/samtools/1029_BICA-T1-TDNA-1_23FC2GLT4_s33/1029_BICA-T1-TDNA-1_23FC2GLT4_s33.recal.cram.stats | Feb 02, 2026 6:46 PM | |
| /variant_calling/tmb/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.tnseq.filtered_custom.ann_snpEff_VEP.ann.vars.txt | Feb 02, 2026 6:43 PM | |
| /variant_calling/tmb/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.tnseq.filtered_custom.ann_snpEff_VEP.ann.tmb.csv | Feb 02, 2026 6:43 PM | |
| /variant_calling/tmb/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.tnseq.filtered_custom.ann_snpEff_VEP.ann.tmb.txt | Feb 02, 2026 6:43 PM | |
| /annotation/tnseq/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.tnseq.filtered_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 02, 2026 6:42 PM | |
| /variant_calling/chip_variants/1029_BBCQ-N1-BDNA-1_2375WFLT3_s21/1029_BBCQ-N1-BDNA-1_2375WFLT3_s21.chip_candidates.vcf.gz | Feb 02, 2026 6:41 PM | |
| /variant_calling/chip_variants/1029_BBCQ-N1-BDNA-1_2375WFLT3_s21/1029_BBCQ-N1-BDNA-1_2375WFLT3_s21.chip_candidates.vcf.gz.tbi | Feb 02, 2026 6:41 PM | |
| /annotation/tnseq/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.tnseq.filtered_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 02, 2026 6:41 PM | |
| /variant_calling/chip_variants/1029_BG5-N1-BDNA-1_2375WFLT3_s29/somatic_normal/1029_BG5-N1-BDNA-1_2375WFLT3_s29.readcount_annotated.vcf.gz | Feb 02, 2026 6:41 PM |