succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:YARA_MAPPER_R2 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) 1m 31s 4s 1m 23s 4s 360.7 MB 485% 2.0 GB 1.2 GB 0 bytes 1.0 GB 2
aborted NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - 1m 15s - - - - - - - - 3
aborted NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) - 19s - - - - - - - - 3
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE_CUSTOM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 9s 7s 0s 1s 14.1 MB 121% 1.0 MB 3.6 KB 0 bytes 12.0 KB 2
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE_CUSTOM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) 10s 9s 0s 0s 14.4 MB 123% 1.0 MB 3.6 KB 0 bytes 12.0 KB 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;SNP_GRCh38_hg38_wChr) 3m 42s 6s 2m 41s 55s 586.7 MB 121% 28.0 GB 12.0 MB 28.0 GB 1.1 MB 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33;SNP_GRCh38_hg38_wChr) 18m 47s 1m 19s 13m 17s 4m 11s 591.3 MB 104% 115.5 GB 13.7 MB 115.6 GB 1.4 MB 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 21s 11s - - 5.2 MB 1872% 18.4 MB 7.3 MB 0 bytes 7.3 MB 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 3m 49s 1m 25s 1m 56s 28s 1.9 GB 245% 12.0 GB 43.6 MB 11.7 GB 43.8 MB 3
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) 12m 2s 1m 26s 6m 54s 3m 42s 1.9 GB 316% 79.3 GB 65.0 MB 78.8 GB 65.4 MB 3
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 10m 25s 1m 27s 8m 28s 30s 11.3 MB 118% 11.7 GB 128.2 KB 11.7 GB 128.0 KB 3
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) 55m 15s 1m 26s 50m 6s 3m 43s 11.4 MB 121% 78.8 GB 132.5 KB 78.8 GB 132.0 KB 3
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 8m 57s 4s 7m 33s 1m 20s 793.8 MB 213% 27.8 GB 9.7 GB 27.8 GB 9.7 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) 48m 34s 2s 42m 0s 6m 32s 797.9 MB 216% 130.8 GB 50.4 GB 130.9 GB 50.4 GB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) 10s 5s 3s 2s 36.8 MB 931% 59.3 MB 31.3 MB 0 bytes 31.3 MB 5
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) 10s 5s 3s 2s 36.8 MB 931% 59.3 MB 31.3 MB 0 bytes 31.3 MB 3
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;manta) 4s 2s - - 18.8 MB 8312% 184.0 KB 27.0 KB 0 bytes 36.0 KB 5
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;sentieon_haplotyper) 10s 5s 3s 2s 37.2 MB 474% 51.2 MB 27.0 MB 24.0 KB 27.1 MB 4
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 5s 2s 1s 2s 16.6 MB 6034% 5.0 MB 2.6 MB 0 bytes 2.6 MB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;manta) 7s 6s 1s 0s 3.2 MB 4228% 194.8 KB 34.5 KB 0 bytes 44.0 KB 5
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