|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_TUMOR:TABIX_BGZIP_TIDDIT_SV (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;null)
|
5s |
4s |
- |
- |
6.2 MB |
98% |
1.8 MB |
362.8 KB |
0 bytes |
368.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_TUMOR:TIDDIT_SV (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
1h 5m |
2m 6s |
1h 0m |
2m 59s |
38.0 GB |
407% |
456.6 GB |
83.0 GB |
101.2 GB |
3.4 GB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
4m 26s |
3s |
4m 12s |
10s |
22.1 GB |
2997% |
11.3 GB |
437.7 MB |
0 bytes |
457.1 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
3h 16m |
1m 17s |
3h 10m |
3m 56s |
15.3 GB |
1171% |
104.7 GB |
662.2 MB |
13.7 GB |
668.2 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
1h 54m |
1m 25s |
1h 49m |
3m 38s |
7.5 GB |
100% |
149.9 GB |
753.5 MB |
91.0 GB |
761.5 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSORPRO_MSISOMATIC (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
1h 28m |
1m 13s |
1h 23m |
3m 53s |
4.2 GB |
121% |
148.5 GB |
762.0 MB |
89.5 GB |
764.8 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
35s |
31s |
2s |
1s |
345.7 MB |
744% |
41.9 MB |
37.3 KB |
0 bytes |
48.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
4m 18s |
38s |
3m 37s |
2s |
3.6 GB |
108% |
3.2 GB |
11.4 KB |
0 bytes |
28.0 KB |
3 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
- |
9s |
- |
- |
- |
- |
- |
- |
- |
- |
6 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
4m 50s |
2m 4s |
2m 15s |
30s |
1.7 GB |
303% |
24.2 GB |
12.6 GB |
0 bytes |
508.0 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
18m 30s |
1m 25s |
13m 21s |
3m 43s |
1.9 GB |
332% |
164.4 GB |
86.6 GB |
79.9 GB |
4.0 GB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R1:INDEX_MERGE_BAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
4s |
3s |
- |
- |
7.3 MB |
117% |
7.0 MB |
49.2 KB |
0 bytes |
52.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R1:INDEX_MERGE_BAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
6s |
4s |
- |
- |
7.2 MB |
137% |
44.0 MB |
68.1 KB |
0 bytes |
68.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R2:INDEX_MERGE_BAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
5s |
4s |
- |
- |
7.3 MB |
120% |
7.4 MB |
48.6 KB |
0 bytes |
48.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R2:INDEX_MERGE_BAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
5s |
3s |
1s |
1s |
7.2 MB |
129% |
47.7 MB |
69.8 KB |
0 bytes |
72.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:OPTITYPE_CUSTOM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
1m 11s |
41s |
28s |
1s |
572.5 MB |
189% |
78.7 MB |
2.1 MB |
0 bytes |
2.1 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:OPTITYPE_CUSTOM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
4m 53s |
38s |
4m 13s |
1s |
3.6 GB |
110% |
158.8 MB |
2.5 MB |
0 bytes |
2.5 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:YARA_MAPPER_R1 (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
14s |
4s |
8s |
2s |
168.6 MB |
469% |
261.8 MB |
148.7 MB |
0 bytes |
134.1 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:YARA_MAPPER_R1 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)
|
1m 27s |
4s |
1m 19s |
4s |
199.8 MB |
481% |
1.9 GB |
1.1 GB |
0 bytes |
1021.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:YARA_MAPPER_R2 (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)
|
15s |
4s |
9s |
2s |
171.3 MB |
453% |
270.1 MB |
153.2 MB |
0 bytes |
138.3 MB |
2 |