|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr19_38395480-38396145)
|
13m 10s |
1m 39s |
6m 18s |
5m 13s |
692.3 MB |
105% |
10.6 GB |
855.0 KB |
174.0 MB |
864.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr2_218692583-218692710)
|
13m 9s |
1m 29s |
6m 49s |
4m 51s |
619.5 MB |
105% |
11.2 GB |
822.4 KB |
11.1 GB |
828.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr22_46658187-46658307)
|
8m 53s |
1m 38s |
1m 54s |
5m 21s |
582.4 MB |
110% |
3.8 GB |
735.8 KB |
132.4 MB |
748.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr4_40123127-40123212)
|
12m 34s |
1m 38s |
5m 46s |
5m 10s |
586.7 MB |
105% |
9.9 GB |
818.7 KB |
9.9 GB |
828.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr6_29355230-29356195)
|
13m 16s |
1m 37s |
6m 37s |
5m 2s |
693.2 MB |
105% |
11.8 GB |
866.4 KB |
11.7 GB |
876.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr7_117777511-117777765)
|
14m 9s |
1m 37s |
7m 6s |
5m 26s |
586.5 MB |
105% |
11.6 GB |
837.5 KB |
11.5 GB |
844.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr9_114918096-114918138)
|
12m 44s |
1m 35s |
6m 8s |
5m 1s |
595.1 MB |
105% |
10.2 GB |
845.9 KB |
10.1 GB |
852.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:LEARNREADORIENTATIONMODEL (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
11m 54s |
2s |
11m 49s |
3s |
3.0 GB |
109% |
332.0 MB |
174.5 MB |
0 bytes |
174.5 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
8s |
2s |
3s |
3s |
331.7 MB |
362% |
97.5 MB |
2.2 MB |
0 bytes |
2.2 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGEMUTECTSTATS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
6s |
2s |
2s |
2s |
357.5 MB |
272% |
95.1 MB |
691.5 KB |
0 bytes |
696.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_204140035-204140118)
|
49m 22s |
5s |
44m 11s |
5m 6s |
5.2 GB |
127% |
13.8 GB |
18.9 MB |
13.0 GB |
18.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122788758-122788929)
|
54m 35s |
1m 39s |
47m 55s |
5m 1s |
6.2 GB |
128% |
13.9 GB |
20.9 MB |
13.1 GB |
20.9 MB |
6 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975)
|
59m 4s |
1m 30s |
52m 34s |
5m 0s |
5.5 GB |
130% |
14.7 GB |
22.7 MB |
14.2 GB |
22.8 MB |
5 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008)
|
46m 9s |
1m 36s |
39m 11s |
5m 22s |
5.0 GB |
122% |
13.4 GB |
20.3 MB |
12.8 GB |
20.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008)
|
43m 2s |
1m 29s |
36m 33s |
5m 0s |
4.1 GB |
125% |
11.9 GB |
17.9 MB |
11.3 GB |
17.9 MB |
6 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr19_38395480-38396145)
|
48m 43s |
1m 38s |
42m 4s |
5m 1s |
4.4 GB |
122% |
12.9 GB |
22.2 MB |
2.2 GB |
22.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr2_218692583-218692710)
|
53m 53s |
1m 36s |
47m 15s |
5m 2s |
4.9 GB |
131% |
14.3 GB |
20.7 MB |
13.5 GB |
20.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr22_46658187-46658307)
|
20m 36s |
1m 37s |
13m 38s |
5m 21s |
1.7 GB |
132% |
5.0 GB |
7.5 MB |
1001.6 MB |
7.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr4_40123127-40123212)
|
46m 23s |
1m 35s |
39m 13s |
5m 35s |
3.6 GB |
119% |
13.0 GB |
18.8 MB |
12.0 GB |
18.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr6_29306690-29307655)
|
49m 43s |
1m 36s |
42m 34s |
5m 33s |
5.4 GB |
129% |
12.8 GB |
21.8 MB |
2.3 GB |
21.8 MB |
6 |