|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 6s |
3s |
2m 9s |
54s |
7.9 MB |
100% |
27.6 GB |
162.1 KB |
27.6 GB |
168.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 15s |
3s |
2m 14s |
58s |
481.0 MB |
100% |
30.4 GB |
13.3 MB |
30.2 GB |
13.3 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 10s |
3s |
2m 11s |
56s |
479.6 MB |
100% |
29.8 GB |
7.3 MB |
29.6 GB |
7.3 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
2s |
- |
- |
9.4 MB |
127% |
1.5 MB |
151.2 KB |
0 bytes |
156.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
40s |
38s |
- |
- |
3.3 MB |
110% |
156.3 KB |
12.7 KB |
0 bytes |
16.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3s |
2s |
- |
- |
9.4 MB |
125% |
1.5 MB |
151.6 KB |
0 bytes |
156.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
2s |
- |
- |
9.7 MB |
134% |
949.0 KB |
144.8 KB |
0 bytes |
148.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
5s |
- |
- |
3.3 MB |
118% |
126.1 KB |
7.3 KB |
0 bytes |
12.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
31s |
2s |
20s |
8s |
3.0 GB |
1079% |
2.0 GB |
29.0 MB |
0 bytes |
22.7 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
2m 43s |
3s |
2m 18s |
22s |
1.3 GB |
118% |
2.0 GB |
2.5 MB |
0 bytes |
2.6 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
40m 26s |
1m 36s |
33m 52s |
4m 58s |
5.5 GB |
489% |
1.3 TB |
138.7 MB |
353.6 GB |
111.1 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
17s |
13s |
3s |
1s |
128.6 MB |
774% |
75.3 MB |
101.3 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
6s |
2s |
3s |
1s |
133.2 MB |
804% |
75.3 MB |
94.0 KB |
0 bytes |
108.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
18s |
12s |
5s |
1s |
243.6 MB |
535% |
85.6 MB |
67.9 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_ASCAT:ASCAT (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
13m 22s |
53s |
6m 44s |
5m 45s |
3.7 GB |
439% |
153.4 GB |
117.0 MB |
154.0 GB |
117.1 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
37m 3s |
2s |
31m 48s |
5m 12s |
6.6 GB |
186% |
860.1 GB |
704.5 GB |
157.4 GB |
2.7 GB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
51m 58s |
1m 25s |
45m 28s |
5m 5s |
856.2 MB |
941% |
1.4 TB |
210.1 MB |
298.1 GB |
204.3 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:CALCULATECONTAMINATION (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
11s |
2s |
8s |
1s |
735.6 MB |
191% |
98.6 MB |
705.7 KB |
0 bytes |
700.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:FILTERMUTECTCALLS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
30s |
2s |
18s |
10s |
676.7 MB |
187% |
5.0 GB |
2.4 MB |
0 bytes |
2.4 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_NORMAL (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
9s |
3s |
3s |
3s |
358.8 MB |
312% |
106.8 MB |
2.3 MB |
0 bytes |
2.3 MB |
3 |